Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Col7a1Q63870 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col7a1Q63870 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col7a1Q63870 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
Col7a1Q63870 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Col7a1Q63870 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Col7a1Q63870 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC20.14■□□□□ 0.81
Col7a1Q63870 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC20.14■□□□□ 0.81
Col7a1Q63870 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col7a1Q63870 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Col7a1Q63870 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC20.13■□□□□ 0.81
Col7a1Q63870 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col7a1Q63870 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC20.12■□□□□ 0.81
Col7a1Q63870 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Col7a1Q63870 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col7a1Q63870 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col7a1Q63870 Slc35b2-207ENSMUST00000226086 850 ntBASIC20.12■□□□□ 0.81
Col7a1Q63870 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col7a1Q63870 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col7a1Q63870 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col7a1Q63870 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC20.11■□□□□ 0.81
Col7a1Q63870 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Col7a1Q63870 Gm37136-201ENSMUST00000194368 194 ntBASIC20.1■□□□□ 0.81
Col7a1Q63870 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Col7a1Q63870 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Col7a1Q63870 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col7a1Q63870 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC20.07■□□□□ 0.8
Col7a1Q63870 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Col7a1Q63870 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col7a1Q63870 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
Col7a1Q63870 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col7a1Q63870 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col7a1Q63870 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col7a1Q63870 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC20.06■□□□□ 0.8
Col7a1Q63870 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
Col7a1Q63870 Gm9812-201ENSMUST00000061934 968 ntBASIC20.06■□□□□ 0.8
Col7a1Q63870 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC20.05■□□□□ 0.8
Col7a1Q63870 AC122317.2-201ENSMUST00000218708 1248 ntBASIC20.05■□□□□ 0.8
Col7a1Q63870 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col7a1Q63870 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col7a1Q63870 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col7a1Q63870 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col7a1Q63870 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Col7a1Q63870 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Col7a1Q63870 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col7a1Q63870 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col7a1Q63870 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Col7a1Q63870 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC20.03■□□□□ 0.8
Col7a1Q63870 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col7a1Q63870 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC20.02■□□□□ 0.79
Col7a1Q63870 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Col7a1Q63870 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Col7a1Q63870 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC20■□□□□ 0.79
Col7a1Q63870 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col7a1Q63870 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Col7a1Q63870 Gm21956-201ENSMUST00000179946 522 ntBASIC19.99■□□□□ 0.79
Col7a1Q63870 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Col7a1Q63870 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Col7a1Q63870 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC19.99■□□□□ 0.79
Col7a1Q63870 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Col7a1Q63870 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC19.98■□□□□ 0.79
Col7a1Q63870 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col7a1Q63870 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col7a1Q63870 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Col7a1Q63870 Gm42501-201ENSMUST00000200220 1026 ntBASIC19.96■□□□□ 0.79
Col7a1Q63870 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC19.96■□□□□ 0.79
Col7a1Q63870 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC19.96■□□□□ 0.79
Col7a1Q63870 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col7a1Q63870 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Col7a1Q63870 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC19.96■□□□□ 0.79
Col7a1Q63870 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Col7a1Q63870 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC19.96■□□□□ 0.79
Col7a1Q63870 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Col7a1Q63870 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC19.96■□□□□ 0.79
Col7a1Q63870 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Col7a1Q63870 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Col7a1Q63870 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col7a1Q63870 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col7a1Q63870 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Col7a1Q63870 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Col7a1Q63870 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC19.94■□□□□ 0.78
Col7a1Q63870 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Col7a1Q63870 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC19.94■□□□□ 0.78
Col7a1Q63870 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Col7a1Q63870 Gm13241-201ENSMUST00000094493 780 ntBASIC19.94■□□□□ 0.78
Col7a1Q63870 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Col7a1Q63870 Etf1-202ENSMUST00000180351 108 ntBASIC19.94■□□□□ 0.78
Col7a1Q63870 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col7a1Q63870 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col7a1Q63870 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC19.93■□□□□ 0.78
Col7a1Q63870 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col7a1Q63870 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col7a1Q63870 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col7a1Q63870 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Col7a1Q63870 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Col7a1Q63870 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col7a1Q63870 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC19.9■□□□□ 0.78
Col7a1Q63870 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC19.9■□□□□ 0.78
Col7a1Q63870 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Col7a1Q63870 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC19.89■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms