Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Ddb1Q3U1J4 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC30.23■■■□□ 2.43
Ddb1Q3U1J4 AC153911.1-201ENSMUST00000220378 758 ntBASIC30.23■■■□□ 2.43
Ddb1Q3U1J4 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC30.23■■■□□ 2.43
Ddb1Q3U1J4 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC30.23■■■□□ 2.43
Ddb1Q3U1J4 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
Ddb1Q3U1J4 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC30.22■■■□□ 2.43
Ddb1Q3U1J4 Terc-201ENSMUST00000082862 423 ntBASIC30.21■■■□□ 2.43
Ddb1Q3U1J4 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC30.21■■■□□ 2.43
Ddb1Q3U1J4 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC30.2■■■□□ 2.43
Ddb1Q3U1J4 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC30.2■■■□□ 2.43
Ddb1Q3U1J4 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
Ddb1Q3U1J4 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC30.18■■■□□ 2.42
Ddb1Q3U1J4 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC30.17■■■□□ 2.42
Ddb1Q3U1J4 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
Ddb1Q3U1J4 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
Ddb1Q3U1J4 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC30.16■■■□□ 2.42
Ddb1Q3U1J4 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC30.16■■■□□ 2.42
Ddb1Q3U1J4 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC30.16■■■□□ 2.42
Ddb1Q3U1J4 AC093043.1-201ENSMUST00000226700 898 ntBASIC30.16■■■□□ 2.42
Ddb1Q3U1J4 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
Ddb1Q3U1J4 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Ddb1Q3U1J4 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
Ddb1Q3U1J4 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC30.15■■■□□ 2.42
Ddb1Q3U1J4 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
Ddb1Q3U1J4 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
Ddb1Q3U1J4 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
Ddb1Q3U1J4 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
Ddb1Q3U1J4 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
Ddb1Q3U1J4 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC30.12■■■□□ 2.41
Ddb1Q3U1J4 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
Ddb1Q3U1J4 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC30.11■■■□□ 2.41
Ddb1Q3U1J4 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
Ddb1Q3U1J4 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Ddb1Q3U1J4 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Ddb1Q3U1J4 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Ddb1Q3U1J4 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
Ddb1Q3U1J4 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC30.1■■■□□ 2.41
Ddb1Q3U1J4 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC30.1■■■□□ 2.41
Ddb1Q3U1J4 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC30.1■■■□□ 2.41
Ddb1Q3U1J4 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
Ddb1Q3U1J4 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC30.09■■■□□ 2.41
Ddb1Q3U1J4 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
Ddb1Q3U1J4 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
Ddb1Q3U1J4 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC30.07■■■□□ 2.4
Ddb1Q3U1J4 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC30.07■■■□□ 2.4
Ddb1Q3U1J4 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC30.06■■■□□ 2.4
Ddb1Q3U1J4 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC30.06■■■□□ 2.4
Ddb1Q3U1J4 Rps24-207ENSMUST00000224568 714 ntBASIC30.06■■■□□ 2.4
Ddb1Q3U1J4 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
Ddb1Q3U1J4 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
Ddb1Q3U1J4 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC30.05■■■□□ 2.4
Ddb1Q3U1J4 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
Ddb1Q3U1J4 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC30.04■■■□□ 2.4
Ddb1Q3U1J4 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
Ddb1Q3U1J4 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
Ddb1Q3U1J4 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC30.03■■■□□ 2.4
Ddb1Q3U1J4 Gm15820-201ENSMUST00000201566 728 ntBASIC30.03■■■□□ 2.4
Ddb1Q3U1J4 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
Ddb1Q3U1J4 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
Ddb1Q3U1J4 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC30.02■■■□□ 2.4
Ddb1Q3U1J4 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC30.02■■■□□ 2.4
Ddb1Q3U1J4 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
Ddb1Q3U1J4 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
Ddb1Q3U1J4 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC30.02■■■□□ 2.4
Ddb1Q3U1J4 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
Ddb1Q3U1J4 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC30.01■■■□□ 2.39
Ddb1Q3U1J4 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC30■■■□□ 2.39
Ddb1Q3U1J4 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
Ddb1Q3U1J4 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC30■■■□□ 2.39
Ddb1Q3U1J4 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC30■■■□□ 2.39
Ddb1Q3U1J4 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
Ddb1Q3U1J4 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC29.98■■■□□ 2.39
Ddb1Q3U1J4 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC29.98■■■□□ 2.39
Ddb1Q3U1J4 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
Ddb1Q3U1J4 Gm13238-201ENSMUST00000117655 780 ntBASIC29.97■■■□□ 2.39
Ddb1Q3U1J4 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
Ddb1Q3U1J4 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC29.97■■■□□ 2.39
Ddb1Q3U1J4 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
Ddb1Q3U1J4 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
Ddb1Q3U1J4 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
Ddb1Q3U1J4 Gm44428-201ENSMUST00000204474 874 ntBASIC29.96■■■□□ 2.39
Ddb1Q3U1J4 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
Ddb1Q3U1J4 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
Ddb1Q3U1J4 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC29.95■■■□□ 2.39
Ddb1Q3U1J4 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
Ddb1Q3U1J4 Gm43566-201ENSMUST00000196851 808 ntBASIC29.94■■■□□ 2.38
Ddb1Q3U1J4 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC29.93■■■□□ 2.38
Ddb1Q3U1J4 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC29.93■■■□□ 2.38
Ddb1Q3U1J4 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
Ddb1Q3U1J4 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC29.92■■■□□ 2.38
Ddb1Q3U1J4 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
Ddb1Q3U1J4 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
Ddb1Q3U1J4 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC29.92■■■□□ 2.38
Ddb1Q3U1J4 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC29.92■■■□□ 2.38
Ddb1Q3U1J4 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC29.91■■■□□ 2.38
Ddb1Q3U1J4 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC29.91■■■□□ 2.38
Ddb1Q3U1J4 Nsd1-203ENSMUST00000224156 1149 ntBASIC29.91■■■□□ 2.38
Ddb1Q3U1J4 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC29.91■■■□□ 2.38
Ddb1Q3U1J4 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC29.91■■■□□ 2.38
Retrieved 100 of 76,532 protein–RNA pairs in 43.9 ms