Protein–RNA interactions for Protein: P02463

Col4a1, Collagen alpha-1(IV) chain, mousemouse

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a1P02463 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC29.28■■■□□ 2.28
Col4a1P02463 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
Col4a1P02463 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
Col4a1P02463 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC29.27■■■□□ 2.28
Col4a1P02463 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC29.27■■■□□ 2.28
Col4a1P02463 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC29.26■■■□□ 2.27
Col4a1P02463 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
Col4a1P02463 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
Col4a1P02463 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC29.26■■■□□ 2.27
Col4a1P02463 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
Col4a1P02463 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC29.25■■■□□ 2.27
Col4a1P02463 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC29.25■■■□□ 2.27
Col4a1P02463 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC29.24■■■□□ 2.27
Col4a1P02463 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
Col4a1P02463 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC29.23■■■□□ 2.27
Col4a1P02463 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC29.23■■■□□ 2.27
Col4a1P02463 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
Col4a1P02463 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC29.22■■■□□ 2.27
Col4a1P02463 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC29.22■■■□□ 2.27
Col4a1P02463 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC29.21■■■□□ 2.27
Col4a1P02463 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC29.21■■■□□ 2.27
Col4a1P02463 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC29.21■■■□□ 2.27
Col4a1P02463 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
Col4a1P02463 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
Col4a1P02463 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
Col4a1P02463 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
Col4a1P02463 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC29.2■■■□□ 2.26
Col4a1P02463 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
Col4a1P02463 Gm37847-201ENSMUST00000192163 1497 ntBASIC29.18■■■□□ 2.26
Col4a1P02463 Gm31748-201ENSMUST00000194938 1497 ntBASIC29.18■■■□□ 2.26
Col4a1P02463 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
Col4a1P02463 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
Col4a1P02463 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC29.18■■■□□ 2.26
Col4a1P02463 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
Col4a1P02463 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC29.16■■■□□ 2.26
Col4a1P02463 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC29.16■■■□□ 2.26
Col4a1P02463 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC29.16■■■□□ 2.26
Col4a1P02463 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC29.16■■■□□ 2.26
Col4a1P02463 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC29.16■■■□□ 2.26
Col4a1P02463 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
Col4a1P02463 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC29.15■■■□□ 2.26
Col4a1P02463 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
Col4a1P02463 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC29.15■■■□□ 2.26
Col4a1P02463 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC29.15■■■□□ 2.26
Col4a1P02463 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC29.15■■■□□ 2.26
Col4a1P02463 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC29.15■■■□□ 2.26
Col4a1P02463 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
Col4a1P02463 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
Col4a1P02463 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
Col4a1P02463 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC29.14■■■□□ 2.25
Col4a1P02463 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
Col4a1P02463 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
Col4a1P02463 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC29.13■■■□□ 2.25
Col4a1P02463 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC29.13■■■□□ 2.25
Col4a1P02463 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
Col4a1P02463 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
Col4a1P02463 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
Col4a1P02463 Terc-201ENSMUST00000082862 423 ntBASIC29.09■■■□□ 2.25
Col4a1P02463 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
Col4a1P02463 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
Col4a1P02463 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
Col4a1P02463 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC29.08■■■□□ 2.25
Col4a1P02463 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC29.07■■■□□ 2.24
Col4a1P02463 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
Col4a1P02463 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
Col4a1P02463 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC29.06■■■□□ 2.24
Col4a1P02463 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC29.06■■■□□ 2.24
Col4a1P02463 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC29.06■■■□□ 2.24
Col4a1P02463 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
Col4a1P02463 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
Col4a1P02463 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC29.05■■■□□ 2.24
Col4a1P02463 AC153911.1-201ENSMUST00000220378 758 ntBASIC29.05■■■□□ 2.24
Col4a1P02463 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
Col4a1P02463 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
Col4a1P02463 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
Col4a1P02463 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC29.04■■■□□ 2.24
Col4a1P02463 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
Col4a1P02463 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC29.03■■■□□ 2.24
Col4a1P02463 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.24
Col4a1P02463 Gm10420-201ENSMUST00000121713 882 ntBASIC29.01■■■□□ 2.23
Col4a1P02463 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC29.01■■■□□ 2.23
Col4a1P02463 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
Col4a1P02463 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
Col4a1P02463 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
Col4a1P02463 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
Col4a1P02463 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
Col4a1P02463 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
Col4a1P02463 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC28.98■■■□□ 2.23
Col4a1P02463 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC28.98■■■□□ 2.23
Col4a1P02463 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
Col4a1P02463 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC28.97■■■□□ 2.23
Col4a1P02463 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC28.96■■■□□ 2.23
Col4a1P02463 Gm5067-201ENSMUST00000170449 1009 ntBASIC28.96■■■□□ 2.23
Col4a1P02463 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC28.96■■■□□ 2.23
Col4a1P02463 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC28.96■■■□□ 2.23
Col4a1P02463 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC28.95■■■□□ 2.23
Col4a1P02463 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC28.95■■■□□ 2.23
Col4a1P02463 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC28.95■■■□□ 2.22
Col4a1P02463 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC28.95■■■□□ 2.22
Col4a1P02463 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC28.94■■■□□ 2.22
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms