Protein–RNA interactions for Protein: A0A075B633

Trav8n-2, T cell receptor alpha variable 8n-2 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8n-2A0A075B633 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Trav8n-2A0A075B633 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Trav8n-2A0A075B633 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC21.39■■□□□ 1.01
Trav8n-2A0A075B633 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
Trav8n-2A0A075B633 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Trav8n-2A0A075B633 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Trav8n-2A0A075B633 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Trav8n-2A0A075B633 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC21.36■■□□□ 1.01
Trav8n-2A0A075B633 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC21.36■■□□□ 1.01
Trav8n-2A0A075B633 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
Trav8n-2A0A075B633 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Trav8n-2A0A075B633 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trav8n-2A0A075B633 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC21.35■■□□□ 1.01
Trav8n-2A0A075B633 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC21.35■■□□□ 1.01
Trav8n-2A0A075B633 AC151971.4-201ENSMUST00000214717 704 ntBASIC21.35■■□□□ 1.01
Trav8n-2A0A075B633 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trav8n-2A0A075B633 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trav8n-2A0A075B633 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trav8n-2A0A075B633 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trav8n-2A0A075B633 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Trav8n-2A0A075B633 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC21.34■■□□□ 1.01
Trav8n-2A0A075B633 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Trav8n-2A0A075B633 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trav8n-2A0A075B633 Gm5921-201ENSMUST00000075898 882 ntBASIC21.34■■□□□ 1.01
Trav8n-2A0A075B633 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trav8n-2A0A075B633 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Trav8n-2A0A075B633 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Trav8n-2A0A075B633 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Trav8n-2A0A075B633 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC21.33■■□□□ 1
Trav8n-2A0A075B633 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trav8n-2A0A075B633 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
Trav8n-2A0A075B633 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trav8n-2A0A075B633 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trav8n-2A0A075B633 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trav8n-2A0A075B633 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
Trav8n-2A0A075B633 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC21.31■■□□□ 1
Trav8n-2A0A075B633 Gm5812-201ENSMUST00000061073 957 ntBASIC21.31■■□□□ 1
Trav8n-2A0A075B633 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Trav8n-2A0A075B633 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trav8n-2A0A075B633 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
Trav8n-2A0A075B633 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trav8n-2A0A075B633 Gm37847-201ENSMUST00000192163 1497 ntBASIC21.3■■□□□ 1
Trav8n-2A0A075B633 Gm31748-201ENSMUST00000194938 1497 ntBASIC21.3■■□□□ 1
Trav8n-2A0A075B633 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trav8n-2A0A075B633 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Trav8n-2A0A075B633 Gm43445-201ENSMUST00000198564 2091 ntBASIC21.29■■□□□ 1
Trav8n-2A0A075B633 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trav8n-2A0A075B633 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trav8n-2A0A075B633 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC21.28■■□□□ 1
Trav8n-2A0A075B633 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trav8n-2A0A075B633 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC21.28■■□□□ 1
Trav8n-2A0A075B633 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC21.28■■□□□ 1
Trav8n-2A0A075B633 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trav8n-2A0A075B633 Gm14121-201ENSMUST00000121441 1380 ntBASIC21.27■■□□□ 1
Trav8n-2A0A075B633 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Trav8n-2A0A075B633 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trav8n-2A0A075B633 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC21.27■■□□□ 1
Trav8n-2A0A075B633 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC21.27■□□□□ 0.99
Trav8n-2A0A075B633 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trav8n-2A0A075B633 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trav8n-2A0A075B633 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC21.26■□□□□ 0.99
Trav8n-2A0A075B633 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC21.26■□□□□ 0.99
Trav8n-2A0A075B633 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Trav8n-2A0A075B633 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Trav8n-2A0A075B633 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC21.24■□□□□ 0.99
Trav8n-2A0A075B633 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC21.23■□□□□ 0.99
Trav8n-2A0A075B633 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trav8n-2A0A075B633 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Trav8n-2A0A075B633 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trav8n-2A0A075B633 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trav8n-2A0A075B633 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Trav8n-2A0A075B633 Gm44428-201ENSMUST00000204474 874 ntBASIC21.22■□□□□ 0.99
Trav8n-2A0A075B633 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Trav8n-2A0A075B633 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC21.21■□□□□ 0.99
Trav8n-2A0A075B633 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trav8n-2A0A075B633 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trav8n-2A0A075B633 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trav8n-2A0A075B633 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Trav8n-2A0A075B633 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trav8n-2A0A075B633 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trav8n-2A0A075B633 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trav8n-2A0A075B633 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trav8n-2A0A075B633 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Trav8n-2A0A075B633 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Trav8n-2A0A075B633 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trav8n-2A0A075B633 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trav8n-2A0A075B633 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Trav8n-2A0A075B633 Gm15546-201ENSMUST00000122095 826 ntBASIC21.17■□□□□ 0.98
Trav8n-2A0A075B633 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Trav8n-2A0A075B633 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trav8n-2A0A075B633 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC21.17■□□□□ 0.98
Trav8n-2A0A075B633 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trav8n-2A0A075B633 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC21.16■□□□□ 0.98
Trav8n-2A0A075B633 Gm22567-201ENSMUST00000175542 342 ntBASIC21.16■□□□□ 0.98
Trav8n-2A0A075B633 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trav8n-2A0A075B633 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Trav8n-2A0A075B633 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC21.15■□□□□ 0.98
Trav8n-2A0A075B633 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC21.14■□□□□ 0.98
Trav8n-2A0A075B633 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Trav8n-2A0A075B633 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 86.7 ms