RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 UNKQ9C0B0 810 aaKnown RBP14.59□□□□□ -0.07
NUP54-213ENST00000513352 VPS11Q9H270 941 aa14.59□□□□□ -0.07
NUP54-213ENST00000513352 MVB12BQ9H7P6 319 aa14.59□□□□□ -0.07
NUP54-213ENST00000513352 CIDEBQ9UHD4 219 aa14.59□□□□□ -0.07
NUP54-213ENST00000513352 U3KQA8 63 aa14.59□□□□□ -0.07
NUP54-213ENST00000513352 HMX2A2RU54 273 aa14.58□□□□□ -0.08
NUP54-213ENST00000513352 PCNX2A6NKB5 2137 aa14.58□□□□□ -0.08
NUP54-213ENST00000513352 EIF3FO00303 357 aaPredicted RBP14.58□□□□□ -0.08
NUP54-213ENST00000513352 PPM1DO15297 605 aa14.58□□□□□ -0.08
NUP54-213ENST00000513352 NUDT21O43809 227 aaKnown RBP14.58□□□□□ -0.08
NUP54-213ENST00000513352 CDH16O75309 829 aa14.58□□□□□ -0.08
NUP54-213ENST00000513352 SYF2O95926 243 aaKnown RBP14.58□□□□□ -0.08
NUP54-213ENST00000513352 CATP04040 527 aaKnown RBP14.58□□□□□ -0.08
NUP54-213ENST00000513352 ALDOAP04075 364 aaKnown RBP14.58□□□□□ -0.08
NUP54-213ENST00000513352 CCDC166P0CW27 439 aa14.58□□□□□ -0.08
NUP54-213ENST00000513352 KRT15P19012 456 aa14.58□□□□□ -0.08
NUP54-213ENST00000513352 SDHBP21912 280 aa14.58□□□□□ -0.08
NUP54-213ENST00000513352 MAP4P27816 1152 aaKnown RBP14.58□□□□□ -0.08
NUP54-213ENST00000513352 ALDH4A1P30038 563 aa14.58□□□□□ -0.08
NUP54-213ENST00000513352 GMPRP36959 345 aa14.58□□□□□ -0.08
NUP54-213ENST00000513352 FASLGP48023 281 aa14.58□□□□□ -0.08
NUP54-213ENST00000513352 NOVA1P51513 510 aaKnown RBP14.58□□□□□ -0.08
NUP54-213ENST00000513352 GPR18Q14330 331 aa14.58□□□□□ -0.08
NUP54-213ENST00000513352 CSHL1Q14406 222 aa14.58□□□□□ -0.08
NUP54-213ENST00000513352 ZKSCAN8Q15776 578 aaPredicted RBP14.58□□□□□ -0.08
NUP54-213ENST00000513352 KRT71Q3SY84 523 aa14.58□□□□□ -0.08
NUP54-213ENST00000513352 PERM1Q5SV97 790 aa14.58□□□□□ -0.08
NUP54-213ENST00000513352 CHCHD2P9Q5T1J5 151 aaPredicted RBP14.58□□□□□ -0.08
NUP54-213ENST00000513352 TMEM207Q6UWW9 146 aa14.58□□□□□ -0.08
NUP54-213ENST00000513352 UBE2R2Q712K3 238 aaPredicted RBP14.58□□□□□ -0.08
NUP54-213ENST00000513352 C17orf82Q86X59 251 aaPredicted RBP14.58□□□□□ -0.08
NUP54-213ENST00000513352 DCUN1D3Q8IWE4 304 aa14.58□□□□□ -0.08
NUP54-213ENST00000513352 RBM12BQ8IXT5 1001 aaKnown RBP14.58□□□□□ -0.08
NUP54-213ENST00000513352 TBC1D21Q8IYX1 336 aa14.58□□□□□ -0.08
NUP54-213ENST00000513352 SPATA6LQ8N4H0 392 aa14.58□□□□□ -0.08
NUP54-213ENST00000513352 OR5K2Q8NHB8 316 aa14.58□□□□□ -0.08
NUP54-213ENST00000513352 BAHD1Q8TBE0 780 aaPredicted RBP14.58□□□□□ -0.08
NUP54-213ENST00000513352 HNRNPLLQ8WVV9 542 aaKnown RBP14.58□□□□□ -0.08
NUP54-213ENST00000513352 RUFY1Q96T51 708 aa14.58□□□□□ -0.08
NUP54-213ENST00000513352 LDHAL6BQ9BYZ2 381 aaPredicted RBP14.58□□□□□ -0.08
NUP54-213ENST00000513352 KIR3DX1Q9H7L2 352 aa14.58□□□□□ -0.08
NUP54-213ENST00000513352 KCNK4Q9NYG8 393 aa14.58□□□□□ -0.08
NUP54-213ENST00000513352 PLAGL1Q9UM63 463 aa14.58□□□□□ -0.08
NUP54-213ENST00000513352 CEP250Q9BV73 2442 aa14.57□□□□□ -0.08
NUP54-213ENST00000513352 ASXL3Q9C0F0 2248 aa14.57□□□□□ -0.08
NUP54-213ENST00000513352 A0A087X1B8 175 aa14.57□□□□□ -0.08
NUP54-213ENST00000513352 A0A096LPK6 155 aa14.57□□□□□ -0.08
NUP54-213ENST00000513352 SPAARA0A1B0GVQ0 90 aa14.57□□□□□ -0.08
NUP54-213ENST00000513352 EME2A4GXA9 379 aaPredicted RBP14.57□□□□□ -0.08
NUP54-213ENST00000513352 NPEPPSL1A6NEC2 478 aa14.57□□□□□ -0.08
NUP54-213ENST00000513352 BTN3A1O00481 513 aa14.57□□□□□ -0.08
NUP54-213ENST00000513352 ZW10O43264 779 aa14.57□□□□□ -0.08
NUP54-213ENST00000513352 KDM1AO60341 852 aa14.57□□□□□ -0.08
NUP54-213ENST00000513352 MT-ND3P03897 115 aa14.57□□□□□ -0.08
NUP54-213ENST00000513352 SLC35E2BP0CK96 405 aa14.57□□□□□ -0.08
NUP54-213ENST00000513352 CSRP1P21291 193 aaKnown RBP14.57□□□□□ -0.08
NUP54-213ENST00000513352 OR1D5P58170 312 aa14.57□□□□□ -0.08
NUP54-213ENST00000513352 AMZ1Q400G9 498 aa14.57□□□□□ -0.08
NUP54-213ENST00000513352 FBXO38Q6PIJ6 1188 aa14.57□□□□□ -0.08
NUP54-213ENST00000513352 TMEM26Q6ZUK4 368 aa14.57□□□□□ -0.08
NUP54-213ENST00000513352 TDRPQ86YL5 185 aa14.57□□□□□ -0.08
NUP54-213ENST00000513352 MAGEC3Q8TD91 643 aa14.57□□□□□ -0.08
NUP54-213ENST00000513352 ANKRD49Q8WVL7 239 aa14.57□□□□□ -0.08
NUP54-213ENST00000513352 AHCYL2Q96HN2 611 aaKnown RBP14.57□□□□□ -0.08
NUP54-213ENST00000513352 TSNARE1Q96NA8 513 aa14.57□□□□□ -0.08
NUP54-213ENST00000513352 ZIM3Q96PE6 472 aa14.57□□□□□ -0.08
NUP54-213ENST00000513352 CCDC3Q9BQI4 270 aa14.57□□□□□ -0.08
NUP54-213ENST00000513352 RTKNQ9BST9 563 aa14.57□□□□□ -0.08
NUP54-213ENST00000513352 TBC1D10AQ9BXI6 508 aa14.57□□□□□ -0.08
NUP54-213ENST00000513352 ROPN1BQ9BZX4 212 aaPredicted RBP14.57□□□□□ -0.08
NUP54-213ENST00000513352 CENPHQ9H3R5 247 aa14.57□□□□□ -0.08
NUP54-213ENST00000513352 ROPN1Q9HAT0 212 aaPredicted RBP14.57□□□□□ -0.08
NUP54-213ENST00000513352 SLC40A1Q9NP59 571 aa14.57□□□□□ -0.08
NUP54-213ENST00000513352 PCMTD2Q9NV79 361 aa14.57□□□□□ -0.08
NUP54-213ENST00000513352 POLG2Q9UHN1 485 aa14.57□□□□□ -0.08
NUP54-213ENST00000513352 ACOT9Q9Y305 439 aa14.57□□□□□ -0.08
NUP54-213ENST00000513352 PIEZO1Q92508 2521 aa14.56□□□□□ -0.08
NUP54-213ENST00000513352 ARHGEF33A8MVX0 844 aa14.56□□□□□ -0.08
NUP54-213ENST00000513352 ZBTB14O43829 449 aa14.56□□□□□ -0.08
NUP54-213ENST00000513352 RFPL3O75679 317 aa14.56□□□□□ -0.08
NUP54-213ENST00000513352 TCEA3O75764 348 aa14.56□□□□□ -0.08
NUP54-213ENST00000513352 MATN4O95460 622 aa14.56□□□□□ -0.08
NUP54-213ENST00000513352 C1orf105O95561 183 aa14.56□□□□□ -0.08
NUP54-213ENST00000513352 TSPAN12O95859 305 aa14.56□□□□□ -0.08
NUP54-213ENST00000513352 MPOP05164 745 aa14.56□□□□□ -0.08
NUP54-213ENST00000513352 C2P06681 752 aa14.56□□□□□ -0.08
NUP54-213ENST00000513352 C8GP07360 202 aa14.56□□□□□ -0.08
NUP54-213ENST00000513352 LTA4HP09960 611 aaKnown RBP14.56□□□□□ -0.08
NUP54-213ENST00000513352 H2AFXP16104 143 aaPredicted RBP14.56□□□□□ -0.08
NUP54-213ENST00000513352 AMD1P17707 334 aa14.56□□□□□ -0.08
NUP54-213ENST00000513352 CYP2A7P20853 494 aa14.56□□□□□ -0.08
NUP54-213ENST00000513352 ACP1P24666 158 aa14.56□□□□□ -0.08
NUP54-213ENST00000513352 CCNFP41002 786 aa14.56□□□□□ -0.08
NUP54-213ENST00000513352 ACADVLP49748 655 aa14.56□□□□□ -0.08
NUP54-213ENST00000513352 SIM1P81133 766 aaPredicted RBP14.56□□□□□ -0.08
NUP54-213ENST00000513352 IRF9Q00978 393 aa14.56□□□□□ -0.08
NUP54-213ENST00000513352 PPM1JQ5JR12 505 aa14.56□□□□□ -0.08
NUP54-213ENST00000513352 CEP85LQ5SZL2 805 aa14.56□□□□□ -0.08
NUP54-213ENST00000513352 CYHR1Q6ZMK1 362 aa14.56□□□□□ -0.08
NUP54-213ENST00000513352 FRA10AC1Q70Z53 315 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms