RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 PDHA2P29803 388 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 ELK3P41970 407 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 SLC1A2P43004 574 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 CSE1LP55060 971 aaKnown RBP12.66□□□□□ -0.38
CLK3-224ENST00000568605 RAB15P59190 212 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 PDIA2Q13087 525 aaKnown RBP12.66□□□□□ -0.38
CLK3-224ENST00000568605 C16orf72Q14CZ0 275 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 BRD3Q15059 726 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 TTLL9Q3SXZ7 439 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 PLEKHS1Q5SXH7 462 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 IRGCQ6NXR0 463 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 XKR5Q6UX68 686 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 UNC5DQ6UXZ4 953 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 ZNF574Q6ZN55 896 aaPredicted RBP12.66□□□□□ -0.38
CLK3-224ENST00000568605 KIAA0408Q6ZU52 694 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 AGGF1Q8N302 714 aaeCLIP12.66□□□□□ -0.38
CLK3-224ENST00000568605 RCBTB1Q8NDN9 531 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 SNIP1Q8TAD8 396 aaKnown RBP12.66□□□□□ -0.38
CLK3-224ENST00000568605 CERS2Q96G23 380 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 CFAP36Q96G28 342 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 FOPNLQ96NB1 174 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 TGM7Q96PF1 710 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 HGH1Q9BTY7 390 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 PHACTR1Q9C0D0 580 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 PPANQ9NQ55 473 aaKnown RBP12.66□□□□□ -0.38
CLK3-224ENST00000568605 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.66□□□□□ -0.38
CLK3-224ENST00000568605 IL1RAPL1Q9NZN1 696 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 PDP2Q9P2J9 529 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 EPHA6Q9UF33 1036 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 KLHL3Q9UH77 587 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 POLG2Q9UHN1 485 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 ZMIZ1Q9ULJ6 1067 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 CRYL1Q9Y2S2 319 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 HEATR5BQ9P2D3 2071 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 EPG5Q9HCE0 2579 aa12.66□□□□□ -0.38
CLK3-224ENST00000568605 EIF3HO15372 352 aaKnown RBP eCLIP12.65□□□□□ -0.38
CLK3-224ENST00000568605 CAPN5O15484 640 aaPredicted RBP12.65□□□□□ -0.38
CLK3-224ENST00000568605 RRP8O43159 456 aaKnown RBP12.65□□□□□ -0.38
CLK3-224ENST00000568605 PKMP14618 531 aaKnown RBP12.65□□□□□ -0.38
CLK3-224ENST00000568605 CHRM3P20309 590 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 CD82P27701 267 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 AOAHP28039 575 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 ATP5DP30049 168 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 FMO4P31512 558 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 CCR7P32248 378 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 SHMT2P34897 504 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 MAPK10P53779 464 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 GFERP55789 205 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 CFHR1Q03591 330 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 CTBP1Q13363 440 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 MSS51Q4VC12 460 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 HSP90AA5PQ58FG0 334 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 CTSL3PQ5NE16 218 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 DNTTIP2Q5QJE6 756 aaKnown RBP12.65□□□□□ -0.38
CLK3-224ENST00000568605 TTC23LQ6PF05 361 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 LRRC69Q6ZNQ3 347 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 PRSS42Q7Z5A4 293 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 CLEC14AQ86T13 490 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 FAM129CQ86XR2 697 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 DCUN1D3Q8IWE4 304 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 TBC1D21Q8IYX1 336 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 CARFQ8N187 725 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 KRT222Q8N1A0 295 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 RAB42Q8N4Z0 105 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 ZNF248Q8NDW4 579 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 OR5K2Q8NHB8 316 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 LKAAEAR1Q8TD35 194 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 SKA2Q8WVK7 121 aaPredicted RBP12.65□□□□□ -0.38
CLK3-224ENST00000568605 LCN9Q8WX39 176 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 FGF11Q92914 225 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 C9orf72Q96LT7 481 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 SLC46A1Q96NT5 459 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 RAB11FIP5Q9BXF6 653 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 B3GNT4Q9C0J1 378 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 SRMSQ9H3Y6 488 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 ASCL3Q9NQ33 180 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 FBXO6Q9NRD1 293 aaPredicted RBP12.65□□□□□ -0.38
CLK3-224ENST00000568605 IARS2Q9NSE4 1012 aaKnown RBP12.65□□□□□ -0.38
CLK3-224ENST00000568605 OGFRQ9NZT2 677 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 TMEM9Q9P0T7 183 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 FBXO5Q9UKT4 447 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 PCDHGA7Q9Y5G6 932 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 TEX264Q9Y6I9 313 aa12.65□□□□□ -0.38
CLK3-224ENST00000568605 CACNA1BQ00975 2339 aa12.64□□□□□ -0.39
CLK3-224ENST00000568605 PRAMEF33A0A0G2JMD5 474 aa12.64□□□□□ -0.39
CLK3-224ENST00000568605 CTAGE15A4D2H0 777 aa12.64□□□□□ -0.39
CLK3-224ENST00000568605 TLCD2A6NGC4 264 aa12.64□□□□□ -0.39
CLK3-224ENST00000568605 IQCF5A8MTL0 148 aa12.64□□□□□ -0.39
CLK3-224ENST00000568605 A8MU76 341 aa12.64□□□□□ -0.39
CLK3-224ENST00000568605 CDRT15L2A8MXV6 281 aa12.64□□□□□ -0.39
CLK3-224ENST00000568605 E7ESA3 106 aa12.64□□□□□ -0.39
CLK3-224ENST00000568605 NIPSNAP2O75323 286 aa12.64□□□□□ -0.39
CLK3-224ENST00000568605 GPC4O75487 556 aa12.64□□□□□ -0.39
CLK3-224ENST00000568605 SLCO2B1O94956 709 aa12.64□□□□□ -0.39
CLK3-224ENST00000568605 CAPNS1P04632 268 aa12.64□□□□□ -0.39
CLK3-224ENST00000568605 CTAGE8P0CG41 777 aa12.64□□□□□ -0.39
CLK3-224ENST00000568605 HGFP14210 728 aa12.64□□□□□ -0.39
CLK3-224ENST00000568605 MPSTP25325 297 aa12.64□□□□□ -0.39
CLK3-224ENST00000568605 ACADLP28330 430 aa12.64□□□□□ -0.39
CLK3-224ENST00000568605 CACHD1Q5VU97 1274 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms