RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 SCARF2Q96GP6 870 aaPredicted RBP18.19■□□□□ 0.5
CLN3-206ENST00000360019 DPEP2Q9H4A9 486 aa18.19■□□□□ 0.5
CLN3-206ENST00000360019 PTBP2Q9UKA9 531 aaKnown RBP18.19■□□□□ 0.5
CLN3-206ENST00000360019 RAP2CQ9Y3L5 183 aa18.19■□□□□ 0.5
CLN3-206ENST00000360019 TECTAO75443 2155 aa18.19■□□□□ 0.5
CLN3-206ENST00000360019 UBFD1O14562 309 aaKnown RBP18.19■□□□□ 0.5
CLN3-206ENST00000360019 S100BP04271 92 aaPredicted RBP18.19■□□□□ 0.5
CLN3-206ENST00000360019 PLOD1Q02809 727 aaPredicted RBP18.19■□□□□ 0.5
CLN3-206ENST00000360019 EEF1AKMT2Q5JPI9 291 aaKnown RBP18.19■□□□□ 0.5
CLN3-206ENST00000360019 CHST15Q7LFX5 561 aaPredicted RBP18.19■□□□□ 0.5
CLN3-206ENST00000360019 ABI3BPQ7Z7G0 1075 aa18.19■□□□□ 0.5
CLN3-206ENST00000360019 OR56A4Q8NGH8 313 aa18.19■□□□□ 0.5
CLN3-206ENST00000360019 AGR3Q8TD06 166 aa18.19■□□□□ 0.5
CLN3-206ENST00000360019 PDXPQ96GD0 296 aa18.19■□□□□ 0.5
CLN3-206ENST00000360019 EGFL8Q99944 293 aa18.19■□□□□ 0.5
CLN3-206ENST00000360019 TMEM79Q9BSE2 394 aa18.19■□□□□ 0.5
CLN3-206ENST00000360019 IER2Q9BTL4 223 aa18.19■□□□□ 0.5
CLN3-206ENST00000360019 TRMOQ9BU70 441 aa18.19■□□□□ 0.5
CLN3-206ENST00000360019 OR52A5Q9H2C5 316 aa18.19■□□□□ 0.5
CLN3-206ENST00000360019 EIF2B4Q9UI10 523 aaKnown RBP18.19■□□□□ 0.5
CLN3-206ENST00000360019 ZDHHC2Q9UIJ5 367 aa18.19■□□□□ 0.5
CLN3-206ENST00000360019 MOSPD1Q9UJG1 213 aa18.19■□□□□ 0.5
CLN3-206ENST00000360019 PCTPQ9UKL6 214 aa18.19■□□□□ 0.5
CLN3-206ENST00000360019 DMTF1Q9Y222 760 aa18.19■□□□□ 0.5
CLN3-206ENST00000360019 SLCO1B1Q9Y6L6 691 aa18.19■□□□□ 0.5
CLN3-206ENST00000360019 PRSS38A1L453 326 aa18.18■□□□□ 0.5
CLN3-206ENST00000360019 ARHGEF33A8MVX0 844 aa18.18■□□□□ 0.5
CLN3-206ENST00000360019 PPP6CO00743 305 aa18.18■□□□□ 0.5
CLN3-206ENST00000360019 ACP5P13686 325 aa18.18■□□□□ 0.5
CLN3-206ENST00000360019 CYP2A7P20853 494 aa18.18■□□□□ 0.5
CLN3-206ENST00000360019 CCR3P51677 355 aa18.18■□□□□ 0.5
CLN3-206ENST00000360019 GALNT1Q10472 559 aaPredicted RBP18.18■□□□□ 0.5
CLN3-206ENST00000360019 PRKAA1Q13131 559 aa18.18■□□□□ 0.5
CLN3-206ENST00000360019 PCBP2Q15366 365 aaKnown RBP eCLIP18.18■□□□□ 0.5
CLN3-206ENST00000360019 ANKS6Q68DC2 871 aa18.18■□□□□ 0.5
CLN3-206ENST00000360019 SULT1C3Q6IMI6 304 aa18.18■□□□□ 0.5
CLN3-206ENST00000360019 GALNT13Q8IUC8 556 aa18.18■□□□□ 0.5
CLN3-206ENST00000360019 ZNF483Q8TF39 744 aaPredicted RBP18.18■□□□□ 0.5
CLN3-206ENST00000360019 OR1E3Q8WZA6 343 aa18.18■□□□□ 0.5
CLN3-206ENST00000360019 EDAQ92838 391 aa18.18■□□□□ 0.5
CLN3-206ENST00000360019 ILKAPQ9H0C8 392 aaPredicted RBP18.18■□□□□ 0.5
CLN3-206ENST00000360019 ZBTB26Q9HCK0 441 aa18.18■□□□□ 0.5
CLN3-206ENST00000360019 TNFRSF12AQ9NP84 129 aa18.18■□□□□ 0.5
CLN3-206ENST00000360019 ARL15Q9NXU5 204 aa18.18■□□□□ 0.5
CLN3-206ENST00000360019 PNMA8BQ9ULN7 279 aaPredicted RBP18.18■□□□□ 0.5
CLN3-206ENST00000360019 PLEKHM1Q9Y4G2 1056 aa18.18■□□□□ 0.5
CLN3-206ENST00000360019 A0A0G2JND7 137 aa18.17■□□□□ 0.5
CLN3-206ENST00000360019 A0A1W2PPC4 97 aa18.17■□□□□ 0.5
CLN3-206ENST00000360019 E2F3O00716 465 aa18.17■□□□□ 0.5
CLN3-206ENST00000360019 ACADLP28330 430 aa18.17■□□□□ 0.5
CLN3-206ENST00000360019 GNPDA1P46926 289 aa18.17■□□□□ 0.5
CLN3-206ENST00000360019 YPEL5P62699 121 aa18.17■□□□□ 0.5
CLN3-206ENST00000360019 CDKL1Q00532 357 aa18.17■□□□□ 0.5
CLN3-206ENST00000360019 DMPKQ09013 629 aa18.17■□□□□ 0.5
CLN3-206ENST00000360019 DMWDQ09019 674 aa18.17■□□□□ 0.5
CLN3-206ENST00000360019 RPA4Q13156 261 aa18.17■□□□□ 0.5
CLN3-206ENST00000360019 ZXDCQ2QGD7 858 aaPredicted RBP18.17■□□□□ 0.5
CLN3-206ENST00000360019 GON4LQ3T8J9 2241 aa18.17■□□□□ 0.5
CLN3-206ENST00000360019 METRNLQ641Q3 311 aa18.17■□□□□ 0.5
CLN3-206ENST00000360019 ENPP7Q6UWV6 458 aa18.17■□□□□ 0.5
CLN3-206ENST00000360019 MAMSTRQ6ZN01 415 aa18.17■□□□□ 0.5
CLN3-206ENST00000360019 Q6ZSR6 202 aa18.17■□□□□ 0.5
CLN3-206ENST00000360019 MAVSQ7Z434 540 aa18.17■□□□□ 0.5
CLN3-206ENST00000360019 CUZD1Q86UP6 607 aa18.17■□□□□ 0.5
CLN3-206ENST00000360019 SLC22A18ASQ8N1D0 253 aa18.17■□□□□ 0.5
CLN3-206ENST00000360019 DEFB119Q8N690 84 aa18.17■□□□□ 0.5
CLN3-206ENST00000360019 SPDYE1Q8NFV5 336 aaPredicted RBP18.17■□□□□ 0.5
CLN3-206ENST00000360019 OR13H1Q8NG92 308 aa18.17■□□□□ 0.5
CLN3-206ENST00000360019 SNX19Q92543 992 aa18.17■□□□□ 0.5
CLN3-206ENST00000360019 WDR92Q96MX6 357 aa18.17■□□□□ 0.5
CLN3-206ENST00000360019 TIMM29Q9BSF4 260 aa18.17■□□□□ 0.5
CLN3-206ENST00000360019 KLC4Q9NSK0 619 aa18.17■□□□□ 0.5
CLN3-206ENST00000360019 CACNA1IQ9P0X4 2223 aa18.17■□□□□ 0.5
CLN3-206ENST00000360019 ARL2BPQ9Y2Y0 163 aa18.17■□□□□ 0.5
CLN3-206ENST00000360019 ZFC3H1O60293 1989 aaKnown RBP18.17■□□□□ 0.5
CLN3-206ENST00000360019 PRR19A6NJB7 356 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 ZNF195O14628 629 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 SCAMP1O15126 338 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 AXIN1O15169 862 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 NDUFS2O75306 463 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 SNUPNO95149 360 aaKnown RBP18.16■□□□□ 0.5
CLN3-206ENST00000360019 ANXA5P08758 320 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 HIST1H2AGP0C0S8 130 aaPredicted RBP18.16■□□□□ 0.5
CLN3-206ENST00000360019 HIST1H2ADP20671 130 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 KELP23276 732 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 NUDT1P36639 197 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 MAGEA9P43362 315 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 BDKRB1P46663 353 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 HSPA7P48741 367 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 CLCQ05315 142 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 CCSMST1Q4G0I0 132 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 CDKL4Q5MAI5 379 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 MCOLN3Q8TDD5 553 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 TRPC4APQ8TEL6 797 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 HIST1H2AHQ96KK5 128 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 UHRF1Q96T88 793 aaPredicted RBP18.16■□□□□ 0.5
CLN3-206ENST00000360019 HIST1H2AJQ99878 128 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 H2AFJQ9BTM1 129 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 TRIM54Q9BYV2 358 aa18.16■□□□□ 0.5
CLN3-206ENST00000360019 CARS2Q9HA77 564 aaKnown RBP18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms