RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	ZNF534	Q76KX8	674 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	SDCCAG8	Q86SQ7	713 aa	Predicted RBP	10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	CAND1	Q86VP6	1230 aa	Known RBP	10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	SLITRK4	Q8IW52	837 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	KRT222	Q8N1A0	295 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	OR4D9	Q8NGE8	314 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	CFAP61	Q8NHU2	1237 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	HM13	Q8TCT9	377 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	USP7	Q93009	1102 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	SLC46A1	Q96NT5	459 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	SERPINB12	Q96P63	405 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	C19orf43	Q9BQ61	176 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	TRIM51	Q9BSJ1	452 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	COG4	Q9H9E3	785 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	SLC40A1	Q9NP59	571 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	WASH6P	Q9NQA3	447 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	THSD1	Q9NS62	852 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	POT1	Q9NUX5	634 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	MARCH4	Q9P2E8	410 aa	Predicted RBP	10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	SOX13	Q9UN79	622 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	COLEC10	Q9Y6Z7	277 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627		F8W8V4	182 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	DNALI1	O14645	258 aa	Predicted RBP	10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	CAPN5	O15484	640 aa	Predicted RBP	10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	TTI1	O43156	1089 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	KRT37	O76014	449 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	AP2A2	O94973	939 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	F7	P08709	466 aa	Predicted RBP	10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	FMO4	P31512	558 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	CCKBR	P32239	447 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	ETV5	P41161	510 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	PTGIR	P43119	386 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	TTPA	P49638	278 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	EPHA4	P54764	986 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	GFER	P55789	205 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	EIF3B	P55884	814 aa	Known RBP	10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	C2orf54	Q08AI8	447 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	HSPA14	Q0VDF9	509 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	EIF3I	Q13347	325 aa	Known RBP	10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	PTK6	Q13882	451 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	KIF26B	Q2KJY2	2108 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	TBC1D25	Q3MII6	688 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	BBS9	Q3SYG4	887 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	PCGF5	Q86SE9	256 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	PLXDC1	Q8IUK5	500 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	NAT8L	Q8N9F0	302 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	MCU	Q8NE86	351 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	OR4E2	Q8NGC2	313 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	GSDMB	Q8TAX9	411 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	SKA2	Q8WVK7	121 aa	Predicted RBP	10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	RSC1A1	Q92681	617 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	FAM136A	Q96C01	138 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	TRIM44	Q96DX7	344 aa	Predicted RBP	10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	LIN37	Q96GY3	246 aa	Predicted RBP	10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	LINC00615	Q96LM1	132 aa	Predicted RBP	10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	RMDN2	Q96LZ7	410 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	C16orf45	Q96MC5	204 aa	Predicted RBP	10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	ZNF578	Q96N58	590 aa	Predicted RBP	10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	CTRC	Q99895	268 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	KIFC1	Q9BW19	673 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	TSSK1B	Q9BXA7	367 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	XAB2	Q9HCS7	855 aa	Known RBP	10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	OCIAD1	Q9NX40	245 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	RIMKLB	Q9ULI2	386 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	CRYL1	Q9Y2S2	319 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	TDRKH	Q9Y2W6	561 aa	Known RBP	10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	NEU2	Q9Y3R4	380 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	RPS6KL1	Q9Y6S9	549 aa		10.8	□□□□□ -0.68
DDB1-222	ENST00000543627	MAP1B	P46821	2468 aa	Known RBP	10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	FREM2	Q5SZK8	3169 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	IGLV3-16	A0A075B6K0	115 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	C17orf113	A0A1B0GUU1	675 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	MAGEB16	A2A368	324 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	KLHL33	A6NCF5	533 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	OR6C74	A6NCV1	312 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	LILRA5	A6NI73	299 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	QSOX1	O00391	747 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	PFDN6	O15212	129 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	KLK10	O43240	276 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	KIF1C	O43896	1103 aa	Known RBP	10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	BANF1	O75531	89 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	CAPNS1	P04632	268 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	ITPKB	P27987	946 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	SLC5A2	P31639	672 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	LEPR	P48357	1165 aa	Known RBP	10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	ARL4D	P49703	201 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	PCBP4	P57723	403 aa	Known RBP	10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	ETF1	P62495	437 aa	Known RBP	10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	ACVR1	Q04771	509 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	FOXM1	Q08050	763 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	ABR	Q12979	859 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	ANKRD20A4	Q4UJ75	823 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	TMEM164	Q5U3C3	297 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	CACHD1	Q5VU97	1274 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	MRNIP	Q6NTE8	343 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	RBM12B	Q8IXT5	1001 aa	Known RBP	10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	AGBL5	Q8NDL9	886 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	TFG	Q92734	400 aa	Predicted RBP	10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	ART4	Q93070	314 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	TMEM159	Q96B96	161 aa		10.79	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms