RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 BTBD3Q9Y2F9 522 aa14.68□□□□□ -0.06
NUP54-213ENST00000513352 TRIM38O00635 465 aa14.67□□□□□ -0.06
NUP54-213ENST00000513352 TPP1O14773 563 aa14.67□□□□□ -0.06
NUP54-213ENST00000513352 LIN7AO14910 233 aaPredicted RBP14.67□□□□□ -0.06
NUP54-213ENST00000513352 KPNA5O15131 536 aa14.67□□□□□ -0.06
NUP54-213ENST00000513352 SIGLEC6O43699 453 aa14.67□□□□□ -0.06
NUP54-213ENST00000513352 SH3BP5O60239 455 aa14.67□□□□□ -0.06
NUP54-213ENST00000513352 CD59P13987 128 aa14.67□□□□□ -0.06
NUP54-213ENST00000513352 SLC2A4P14672 509 aa14.67□□□□□ -0.06
NUP54-213ENST00000513352 MSH2P43246 934 aa14.67□□□□□ -0.06
NUP54-213ENST00000513352 CDKN2DP55273 166 aa14.67□□□□□ -0.06
NUP54-213ENST00000513352 PDAP1Q13442 181 aaKnown RBP14.67□□□□□ -0.06
NUP54-213ENST00000513352 TTLL9Q3SXZ7 439 aa14.67□□□□□ -0.06
NUP54-213ENST00000513352 C6orf132Q5T0Z8 1188 aa14.67□□□□□ -0.06
NUP54-213ENST00000513352 HECTD2Q5U5R9 776 aa14.67□□□□□ -0.06
NUP54-213ENST00000513352 UGT3A1Q6NUS8 523 aa14.67□□□□□ -0.06
NUP54-213ENST00000513352 LVRNQ6Q4G3 990 aa14.67□□□□□ -0.06
NUP54-213ENST00000513352 TAOK1Q7L7X3 1001 aa14.67□□□□□ -0.06
NUP54-213ENST00000513352 PIM3Q86V86 326 aa14.67□□□□□ -0.06
NUP54-213ENST00000513352 TRIM48Q8IWZ4 208 aa14.67□□□□□ -0.06
NUP54-213ENST00000513352 ZBTB2Q8N680 514 aa14.67□□□□□ -0.06
NUP54-213ENST00000513352 KYQ8NBH2 561 aa14.67□□□□□ -0.06
NUP54-213ENST00000513352 KCNJ9Q92806 393 aa14.67□□□□□ -0.06
NUP54-213ENST00000513352 PAFAH2Q99487 392 aa14.67□□□□□ -0.06
NUP54-213ENST00000513352 FUT8Q9BYC5 575 aa14.67□□□□□ -0.06
NUP54-213ENST00000513352 WWP1Q9H0M0 922 aa14.67□□□□□ -0.06
NUP54-213ENST00000513352 EPB41L4BQ9H329 900 aa14.67□□□□□ -0.06
NUP54-213ENST00000513352 ACSL5Q9ULC5 683 aa14.67□□□□□ -0.06
NUP54-213ENST00000513352 SLC39A10Q9ULF5 831 aa14.67□□□□□ -0.06
NUP54-213ENST00000513352 ARID1BQ8NFD5 2236 aaPredicted RBP14.67□□□□□ -0.06
NUP54-213ENST00000513352 SMIM23A6NLE4 172 aa14.66□□□□□ -0.06
NUP54-213ENST00000513352 IFRD1O00458 451 aaPredicted RBP14.66□□□□□ -0.06
NUP54-213ENST00000513352 EML2O95834 649 aa14.66□□□□□ -0.06
NUP54-213ENST00000513352 F3P13726 295 aa14.66□□□□□ -0.06
NUP54-213ENST00000513352 AOAHP28039 575 aa14.66□□□□□ -0.06
NUP54-213ENST00000513352 PDHA2P29803 388 aa14.66□□□□□ -0.06
NUP54-213ENST00000513352 PLA2G5P39877 138 aa14.66□□□□□ -0.06
NUP54-213ENST00000513352 LIMK2P53671 638 aa14.66□□□□□ -0.06
NUP54-213ENST00000513352 MAZP56270 477 aaKnown RBP14.66□□□□□ -0.06
NUP54-213ENST00000513352 DAB2P98082 770 aa14.66□□□□□ -0.06
NUP54-213ENST00000513352 IFFO1Q0D2I5 559 aa14.66□□□□□ -0.06
NUP54-213ENST00000513352 ILF2Q12905 390 aaKnown RBP14.66□□□□□ -0.06
NUP54-213ENST00000513352 BMPR2Q13873 1038 aa14.66□□□□□ -0.06
NUP54-213ENST00000513352 USP10Q14694 798 aaKnown RBP14.66□□□□□ -0.06
NUP54-213ENST00000513352 METRNLQ641Q3 311 aa14.66□□□□□ -0.06
NUP54-213ENST00000513352 ZCCHC8Q6NZY4 707 aaKnown RBP14.66□□□□□ -0.06
NUP54-213ENST00000513352 ALYREFQ86V81 257 aaKnown RBP14.66□□□□□ -0.06
NUP54-213ENST00000513352 SFTPA2Q8IWL1 248 aa14.66□□□□□ -0.06
NUP54-213ENST00000513352 NETO1Q8TDF5 533 aa14.66□□□□□ -0.06
NUP54-213ENST00000513352 ASZ1Q8WWH4 475 aa14.66□□□□□ -0.06
NUP54-213ENST00000513352 SLC44A1Q8WWI5 657 aa14.66□□□□□ -0.06
NUP54-213ENST00000513352 PATE1Q8WXA2 126 aa14.66□□□□□ -0.06
NUP54-213ENST00000513352 CXorf40BQ96DE9 158 aa14.66□□□□□ -0.06
NUP54-213ENST00000513352 C12orf66Q96MD2 445 aa14.66□□□□□ -0.06
NUP54-213ENST00000513352 CAMK1GQ96NX5 476 aa14.66□□□□□ -0.06
NUP54-213ENST00000513352 IMP3Q9NV31 184 aaKnown RBP14.66□□□□□ -0.06
NUP54-213ENST00000513352 GALPQ9UBC7 116 aa14.66□□□□□ -0.06
NUP54-213ENST00000513352 FTSJ1Q9UET6 329 aa14.66□□□□□ -0.06
NUP54-213ENST00000513352 CDV3Q9UKY7 258 aaKnown RBP14.66□□□□□ -0.06
NUP54-213ENST00000513352 MTO1Q9Y2Z2 717 aaKnown RBP14.66□□□□□ -0.06
NUP54-213ENST00000513352 VWA7Q9Y334 891 aa14.66□□□□□ -0.06
NUP54-213ENST00000513352 CFAP20Q9Y6A4 193 aaKnown RBP14.66□□□□□ -0.06
NUP54-213ENST00000513352 GVINP1Q7Z2Y8 2422 aa14.66□□□□□ -0.06
NUP54-213ENST00000513352 OR52A4PA6NMU1 304 aa14.65□□□□□ -0.06
NUP54-213ENST00000513352 CTIFO43310 598 aaKnown RBP14.65□□□□□ -0.06
NUP54-213ENST00000513352 LDOC1O95751 146 aaPredicted RBP14.65□□□□□ -0.06
NUP54-213ENST00000513352 SHBGP04278 402 aa14.65□□□□□ -0.06
NUP54-213ENST00000513352 ITGA2BP08514 1039 aa14.65□□□□□ -0.06
NUP54-213ENST00000513352 GIMD1P0DJR0 217 aa14.65□□□□□ -0.06
NUP54-213ENST00000513352 MYF5P13349 255 aa14.65□□□□□ -0.06
NUP54-213ENST00000513352 RPIAP49247 311 aa14.65□□□□□ -0.06
NUP54-213ENST00000513352 PGGT1BP53609 377 aa14.65□□□□□ -0.06
NUP54-213ENST00000513352 PLOD1Q02809 727 aaPredicted RBP14.65□□□□□ -0.06
NUP54-213ENST00000513352 RPA4Q13156 261 aa14.65□□□□□ -0.06
NUP54-213ENST00000513352 KRT33BQ14525 404 aa14.65□□□□□ -0.06
NUP54-213ENST00000513352 NR0B2Q15466 257 aa14.65□□□□□ -0.06
NUP54-213ENST00000513352 PLEKHS1Q5SXH7 462 aa14.65□□□□□ -0.06
NUP54-213ENST00000513352 MROH9Q5TGP6 573 aa14.65□□□□□ -0.06
NUP54-213ENST00000513352 SLC35F3Q8IY50 421 aa14.65□□□□□ -0.06
NUP54-213ENST00000513352 NAGSQ8N159 534 aa14.65□□□□□ -0.06
NUP54-213ENST00000513352 ARL10Q8N8L6 244 aa14.65□□□□□ -0.06
NUP54-213ENST00000513352 ACVR1CQ8NER5 493 aa14.65□□□□□ -0.06
NUP54-213ENST00000513352 SPDYE1Q8NFV5 336 aaPredicted RBP14.65□□□□□ -0.06
NUP54-213ENST00000513352 CFAP61Q8NHU2 1237 aa14.65□□□□□ -0.06
NUP54-213ENST00000513352 MAPK15Q8TD08 544 aa14.65□□□□□ -0.06
NUP54-213ENST00000513352 CD200R1Q8TD46 325 aa14.65□□□□□ -0.06
NUP54-213ENST00000513352 TSPAN17Q96FV3 270 aa14.65□□□□□ -0.06
NUP54-213ENST00000513352 CNDP2Q96KP4 475 aaKnown RBP14.65□□□□□ -0.06
NUP54-213ENST00000513352 RMDN2Q96LZ7 410 aa14.65□□□□□ -0.06
NUP54-213ENST00000513352 SLC30A3Q99726 388 aa14.65□□□□□ -0.06
NUP54-213ENST00000513352 OLFM1Q99784 485 aa14.65□□□□□ -0.06
NUP54-213ENST00000513352 STN1Q9H668 368 aaKnown RBP14.65□□□□□ -0.06
NUP54-213ENST00000513352 CAB39LQ9H9S4 337 aa14.65□□□□□ -0.06
NUP54-213ENST00000513352 EVA1BQ9NVM1 165 aa14.65□□□□□ -0.06
NUP54-213ENST00000513352 SCHIP1Q9P0W5 487 aaPredicted RBP14.65□□□□□ -0.06
NUP54-213ENST00000513352 WDR37Q9Y2I8 494 aa14.65□□□□□ -0.06
NUP54-213ENST00000513352 DHRS7Q9Y394 339 aa14.65□□□□□ -0.06
NUP54-213ENST00000513352 SLC5A10A0PJK1 596 aa14.64□□□□□ -0.07
NUP54-213ENST00000513352 CPED1A4D0V7 1026 aa14.64□□□□□ -0.07
NUP54-213ENST00000513352 CCDC151A5D8V7 595 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms