RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 CSNK1G3Q9Y6M4 447 aa14.71□□□□□ -0.05
NUP54-213ENST00000513352 ASCC3Q8N3C0 2202 aaKnown RBP14.7□□□□□ -0.06
NUP54-213ENST00000513352 WDR87Q6ZQQ6 2873 aa14.7□□□□□ -0.06
NUP54-213ENST00000513352 EXOC1LA0A1B0GW35 172 aa14.7□□□□□ -0.06
NUP54-213ENST00000513352 LMO7DNF2Z398 122 aa14.7□□□□□ -0.06
NUP54-213ENST00000513352 POC1B-GALNT4F8VUJ3 575 aa14.7□□□□□ -0.06
NUP54-213ENST00000513352 YY2O15391 372 aa14.7□□□□□ -0.06
NUP54-213ENST00000513352 PCDHGA12O60330 932 aa14.7□□□□□ -0.06
NUP54-213ENST00000513352 SAT1P21673 171 aa14.7□□□□□ -0.06
NUP54-213ENST00000513352 GABRB3P28472 473 aa14.7□□□□□ -0.06
NUP54-213ENST00000513352 GP5P40197 560 aa14.7□□□□□ -0.06
NUP54-213ENST00000513352 ARHGAP8P85298 464 aa14.7□□□□□ -0.06
NUP54-213ENST00000513352 KLHL38Q2WGJ6 581 aa14.7□□□□□ -0.06
NUP54-213ENST00000513352 RBM20Q5T481 1227 aaKnown RBP14.7□□□□□ -0.06
NUP54-213ENST00000513352 C11orf96Q7Z7L8 435 aa14.7□□□□□ -0.06
NUP54-213ENST00000513352 CFAP206Q8IYR0 622 aa14.7□□□□□ -0.06
NUP54-213ENST00000513352 SLC25A45Q8N413 288 aa14.7□□□□□ -0.06
NUP54-213ENST00000513352 EID2Q8N6I1 236 aa14.7□□□□□ -0.06
NUP54-213ENST00000513352 BIRC8Q96P09 236 aa14.7□□□□□ -0.06
NUP54-213ENST00000513352 AARSD1Q9BTE6 412 aaKnown RBP14.7□□□□□ -0.06
NUP54-213ENST00000513352 ACSS3Q9H6R3 686 aa14.7□□□□□ -0.06
NUP54-213ENST00000513352 GULP1Q9UBP9 304 aa14.7□□□□□ -0.06
NUP54-213ENST00000513352 TSR3Q9UJK0 312 aaKnown RBP14.7□□□□□ -0.06
NUP54-213ENST00000513352 PSMD13Q9UNM6 376 aa14.7□□□□□ -0.06
NUP54-213ENST00000513352 IKBKGQ9Y6K9 419 aa14.7□□□□□ -0.06
NUP54-213ENST00000513352 PTPRZ1P23471 2315 aaPredicted RBP14.7□□□□□ -0.06
NUP54-213ENST00000513352 KLHL33A6NCF5 533 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 FLRT2O43155 660 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 KCNJ13O60928 360 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 VPS26AO75436 327 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 ERLIN1O75477 346 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 FAM155BO75949 473 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 APOA4P06727 396 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 INHBAP08476 426 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 ABHD2P08910 425 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 GSTM1P09488 218 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 SLC35G4P0C7Q5 338 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 IDSP22304 550 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 RPL10P27635 214 aaKnown RBP14.69□□□□□ -0.06
NUP54-213ENST00000513352 GRK6P43250 576 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 PREPP48147 710 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 ADARP55265 1226 aaKnown RBP14.69□□□□□ -0.06
NUP54-213ENST00000513352 GSTM4Q03013 218 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 SLC29A2Q14542 456 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 ZNF549Q6P9A3 640 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 FAM83HQ6ZRV2 1179 aaPredicted RBP14.69□□□□□ -0.06
NUP54-213ENST00000513352 OTOAQ7RTW8 1153 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 GALNT7Q86SF2 657 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 ZC3HC1Q86WB0 502 aaKnown RBP14.69□□□□□ -0.06
NUP54-213ENST00000513352 SDR16C5Q8N3Y7 309 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 LILRA3Q8N6C8 439 aaPredicted RBP14.69□□□□□ -0.06
NUP54-213ENST00000513352 MYRIPQ8NFW9 859 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 ZDHHC1Q8WTX9 485 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 CAVIN3Q969G5 261 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 LINC00615Q96LM1 132 aaPredicted RBP14.69□□□□□ -0.06
NUP54-213ENST00000513352 RHOJQ9H4E5 214 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 COG4Q9H9E3 785 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 PRDM8Q9NQV8 689 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 SPATS2LQ9NUQ6 558 aaKnown RBP14.69□□□□□ -0.06
NUP54-213ENST00000513352 NLGN3Q9NZ94 848 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 TBC1D29Q9UFV1 150 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 CORO1CQ9ULV4 474 aaPredicted RBP14.69□□□□□ -0.06
NUP54-213ENST00000513352 PCDHGB2Q9Y5G2 931 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 ST14Q9Y5Y6 855 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 COMMD10Q9Y6G5 202 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 MYO15AQ9UKN7 3530 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 GOLGA4Q13439 2230 aaKnown RBP14.69□□□□□ -0.06
NUP54-213ENST00000513352 USP34Q70CQ2 3546 aa14.69□□□□□ -0.06
NUP54-213ENST00000513352 TRBV23OR9-2A0A075B6M9 112 aa14.68□□□□□ -0.06
NUP54-213ENST00000513352 C17orf113A0A1B0GUU1 675 aa14.68□□□□□ -0.06
NUP54-213ENST00000513352 FAM95CA0A1B0GW59 222 aa14.68□□□□□ -0.06
NUP54-213ENST00000513352 C1QAP02745 245 aa14.68□□□□□ -0.06
NUP54-213ENST00000513352 CCR7P32248 378 aa14.68□□□□□ -0.06
NUP54-213ENST00000513352 SPRP35270 261 aaPredicted RBP14.68□□□□□ -0.06
NUP54-213ENST00000513352 HSD17B3P37058 310 aa14.68□□□□□ -0.06
NUP54-213ENST00000513352 HALP42357 657 aa14.68□□□□□ -0.06
NUP54-213ENST00000513352 CLCNKAP51800 687 aa14.68□□□□□ -0.06
NUP54-213ENST00000513352 SLC12A2P55011 1212 aa14.68□□□□□ -0.06
NUP54-213ENST00000513352 DMPKQ09013 629 aa14.68□□□□□ -0.06
NUP54-213ENST00000513352 HSPA14Q0VDF9 509 aa14.68□□□□□ -0.06
NUP54-213ENST00000513352 SLC14A1Q13336 389 aa14.68□□□□□ -0.06
NUP54-213ENST00000513352 BIRC2Q13490 618 aa14.68□□□□□ -0.06
NUP54-213ENST00000513352 GRTP1Q5TC63 336 aa14.68□□□□□ -0.06
NUP54-213ENST00000513352 FAM45BPQ6NSW5 357 aa14.68□□□□□ -0.06
NUP54-213ENST00000513352 KANSL1Q7Z3B3 1105 aa14.68□□□□□ -0.06
NUP54-213ENST00000513352 NAXDQ8IW45 347 aa14.68□□□□□ -0.06
NUP54-213ENST00000513352 SIDT2Q8NBJ9 832 aaKnown RBP14.68□□□□□ -0.06
NUP54-213ENST00000513352 OR4C6Q8NH72 309 aa14.68□□□□□ -0.06
NUP54-213ENST00000513352 FAM45AQ8TCE6 357 aa14.68□□□□□ -0.06
NUP54-213ENST00000513352 RHBDD1Q8TEB9 315 aa14.68□□□□□ -0.06
NUP54-213ENST00000513352 SKA2Q8WVK7 121 aaPredicted RBP14.68□□□□□ -0.06
NUP54-213ENST00000513352 GLMNQ92990 594 aa14.68□□□□□ -0.06
NUP54-213ENST00000513352 TMEM159Q96B96 161 aa14.68□□□□□ -0.06
NUP54-213ENST00000513352 VPS39Q96JC1 886 aa14.68□□□□□ -0.06
NUP54-213ENST00000513352 GPR21Q99679 349 aa14.68□□□□□ -0.06
NUP54-213ENST00000513352 RBBP8Q99708 897 aa14.68□□□□□ -0.06
NUP54-213ENST00000513352 CCDC77Q9BR77 488 aa14.68□□□□□ -0.06
NUP54-213ENST00000513352 DUSP23Q9BVJ7 150 aa14.68□□□□□ -0.06
NUP54-213ENST00000513352 TAS2R13Q9NYV9 303 aa14.68□□□□□ -0.06
NUP54-213ENST00000513352 TRMT6Q9UJA5 497 aaKnown RBP14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms