RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 C1RLQ9NZP8 487 aa7.2□□□□□ -1.26
NUP54-215ENST00000514313 RCC2Q9P258 522 aaKnown RBP7.2□□□□□ -1.26
NUP54-215ENST00000514313 AGO1Q9UL18 857 aaKnown RBP7.2□□□□□ -1.26
NUP54-215ENST00000514313 GOLGA6L9A6NEM1 432 aa7.19□□□□□ -1.26
NUP54-215ENST00000514313 ANXA2P2A6NMY6 339 aa7.19□□□□□ -1.26
NUP54-215ENST00000514313 ABATP80404 500 aa7.19□□□□□ -1.26
NUP54-215ENST00000514313 ROR2Q01974 943 aaKnown RBP7.19□□□□□ -1.26
NUP54-215ENST00000514313 SCN1BQ07699 218 aa7.19□□□□□ -1.26
NUP54-215ENST00000514313 PTK6Q13882 451 aa7.19□□□□□ -1.26
NUP54-215ENST00000514313 TUBB2AQ13885 445 aa7.19□□□□□ -1.26
NUP54-215ENST00000514313 ZRANB3Q5FWF4 1079 aa7.19□□□□□ -1.26
NUP54-215ENST00000514313 C11orf88Q6PI97 169 aa7.19□□□□□ -1.26
NUP54-215ENST00000514313 ZBTB49Q6ZSB9 765 aa7.19□□□□□ -1.26
NUP54-215ENST00000514313 PIWIL3Q7Z3Z3 882 aaKnown RBP7.19□□□□□ -1.26
NUP54-215ENST00000514313 NUP93Q8N1F7 819 aa7.19□□□□□ -1.26
NUP54-215ENST00000514313 SLC5A8Q8N695 610 aa7.19□□□□□ -1.26
NUP54-215ENST00000514313 OR2AJ1Q8NGZ0 328 aa7.19□□□□□ -1.26
NUP54-215ENST00000514313 SPDL1Q96EA4 605 aa7.19□□□□□ -1.26
NUP54-215ENST00000514313 CCDC114Q96M63 670 aa7.19□□□□□ -1.26
NUP54-215ENST00000514313 TMEM79Q9BSE2 394 aa7.19□□□□□ -1.26
NUP54-215ENST00000514313 TUBB2BQ9BVA1 445 aa7.19□□□□□ -1.26
NUP54-215ENST00000514313 MOV10L1Q9BXT6 1211 aaKnown RBP7.19□□□□□ -1.26
NUP54-215ENST00000514313 COPS7BQ9H9Q2 264 aaPredicted RBP7.19□□□□□ -1.26
NUP54-215ENST00000514313 RHCGQ9UBD6 479 aa7.19□□□□□ -1.26
NUP54-215ENST00000514313 ANKUB1A6NFN9 424 aa7.18□□□□□ -1.26
NUP54-215ENST00000514313 CLIC2O15247 247 aa7.18□□□□□ -1.26
NUP54-215ENST00000514313 XRCC3O43542 346 aa7.18□□□□□ -1.26
NUP54-215ENST00000514313 AKAP8O43823 692 aaKnown RBP7.18□□□□□ -1.26
NUP54-215ENST00000514313 ITGB8P26012 769 aa7.18□□□□□ -1.26
NUP54-215ENST00000514313 SSTR2P30874 369 aa7.18□□□□□ -1.26
NUP54-215ENST00000514313 CRYZQ08257 329 aaKnown RBP7.18□□□□□ -1.26
NUP54-215ENST00000514313 TROAPQ12815 778 aa7.18□□□□□ -1.26
NUP54-215ENST00000514313 DHX34Q14147 1143 aaKnown RBP7.18□□□□□ -1.26
NUP54-215ENST00000514313 NFE2L1Q14494 772 aa7.18□□□□□ -1.26
NUP54-215ENST00000514313 SLMAPQ14BN4 828 aa7.18□□□□□ -1.26
NUP54-215ENST00000514313 LEXMQ3ZCV2 418 aa7.18□□□□□ -1.26
NUP54-215ENST00000514313 RAB6CQ53S08 254 aa7.18□□□□□ -1.26
NUP54-215ENST00000514313 PXDC1Q5TGL8 231 aa7.18□□□□□ -1.26
NUP54-215ENST00000514313 SPATA19Q7Z5L4 167 aa7.18□□□□□ -1.26
NUP54-215ENST00000514313 MRPL10Q7Z7H8 261 aaKnown RBP7.18□□□□□ -1.26
NUP54-215ENST00000514313 MAML2Q8IZL2 1156 aaPredicted RBP7.18□□□□□ -1.26
NUP54-215ENST00000514313 NRACQ8N912 160 aa7.18□□□□□ -1.26
NUP54-215ENST00000514313 EXD1Q8NHP7 514 aa7.18□□□□□ -1.26
NUP54-215ENST00000514313 THAP6Q8TBB0 222 aa7.18□□□□□ -1.26
NUP54-215ENST00000514313 NTN5Q8WTR8 489 aaPredicted RBP7.18□□□□□ -1.26
NUP54-215ENST00000514313 DNAAF4Q8WXU2 420 aa7.18□□□□□ -1.26
NUP54-215ENST00000514313 ROBO4Q8WZ75 1007 aa7.18□□□□□ -1.26
NUP54-215ENST00000514313 INTS14Q96SY0 518 aa7.18□□□□□ -1.26
NUP54-215ENST00000514313 RAB6CQ9H0N0 254 aa7.18□□□□□ -1.26
NUP54-215ENST00000514313 RBM38Q9H0Z9 239 aaKnown RBP7.18□□□□□ -1.26
NUP54-215ENST00000514313 DPAGT1Q9H3H5 408 aa7.18□□□□□ -1.26
NUP54-215ENST00000514313 COQ3Q9NZJ6 369 aa7.18□□□□□ -1.26
NUP54-215ENST00000514313 A0A0U1RQK1 487 aa7.17□□□□□ -1.26
NUP54-215ENST00000514313 ZNF320A2RRD8 509 aa7.17□□□□□ -1.26
NUP54-215ENST00000514313 ENO4A6NNW6 628 aa7.17□□□□□ -1.26
NUP54-215ENST00000514313 SUPT20HL2P0C7V6 817 aa7.17□□□□□ -1.26
NUP54-215ENST00000514313 DANCRP0C864 163 aa7.17□□□□□ -1.26
NUP54-215ENST00000514313 PSG1P11464 419 aa7.17□□□□□ -1.26
NUP54-215ENST00000514313 PDGFRAP16234 1089 aa7.17□□□□□ -1.26
NUP54-215ENST00000514313 ZNF75DP51815 510 aa7.17□□□□□ -1.26
NUP54-215ENST00000514313 CTSCP53634 463 aa7.17□□□□□ -1.26
NUP54-215ENST00000514313 GAGE2BQ13066 116 aa7.17□□□□□ -1.26
NUP54-215ENST00000514313 NR1D2Q14995 579 aa7.17□□□□□ -1.26
NUP54-215ENST00000514313 GAGE2EQ4V326 116 aa7.17□□□□□ -1.26
NUP54-215ENST00000514313 GAGE2AQ6NT46 116 aa7.17□□□□□ -1.26
NUP54-215ENST00000514313 FAM198BQ6UWH4 519 aa7.17□□□□□ -1.26
NUP54-215ENST00000514313 CCDC91Q7Z6B0 441 aa7.17□□□□□ -1.26
NUP54-215ENST00000514313 SRRM1Q8IYB3 904 aaKnown RBP7.17□□□□□ -1.26
NUP54-215ENST00000514313 ZNF34Q8IZ26 560 aa7.17□□□□□ -1.26
NUP54-215ENST00000514313 AFAP1L1Q8TED9 768 aa7.17□□□□□ -1.26
NUP54-215ENST00000514313 DENND1AQ8TEH3 1009 aa7.17□□□□□ -1.26
NUP54-215ENST00000514313 WASF1Q92558 559 aa7.17□□□□□ -1.26
NUP54-215ENST00000514313 CORO2AQ92828 525 aa7.17□□□□□ -1.26
NUP54-215ENST00000514313 SPSB1Q96BD6 273 aa7.17□□□□□ -1.26
NUP54-215ENST00000514313 ZNF582Q96NG8 517 aaPredicted RBP7.17□□□□□ -1.26
NUP54-215ENST00000514313 SORCS2Q96PQ0 1159 aa7.17□□□□□ -1.26
NUP54-215ENST00000514313 SLC25A33Q9BSK2 321 aa7.17□□□□□ -1.26
NUP54-215ENST00000514313 MRIQ9BWK5 157 aa7.17□□□□□ -1.26
NUP54-215ENST00000514313 DCLK3Q9C098 648 aa7.17□□□□□ -1.26
NUP54-215ENST00000514313 SEMA6AQ9H2E6 1030 aa7.17□□□□□ -1.26
NUP54-215ENST00000514313 FZD8Q9H461 694 aa7.17□□□□□ -1.26
NUP54-215ENST00000514313 DDX43Q9NXZ2 648 aaKnown RBP7.17□□□□□ -1.26
NUP54-215ENST00000514313 GAGE2DQ9UEU5 116 aa7.17□□□□□ -1.26
NUP54-215ENST00000514313 OR2M5A3KFT3 312 aa7.16□□□□□ -1.26
NUP54-215ENST00000514313 A4D1N5 150 aa7.16□□□□□ -1.26
NUP54-215ENST00000514313 OR6C75A6NL08 312 aa7.16□□□□□ -1.26
NUP54-215ENST00000514313 PSMD14O00487 310 aa7.16□□□□□ -1.26
NUP54-215ENST00000514313 MED24O75448 989 aa7.16□□□□□ -1.26
NUP54-215ENST00000514313 AZGP1P25311 298 aaKnown RBP7.16□□□□□ -1.26
NUP54-215ENST00000514313 CORO1AP31146 461 aaKnown RBP7.16□□□□□ -1.26
NUP54-215ENST00000514313 MTHFRP42898 656 aa7.16□□□□□ -1.26
NUP54-215ENST00000514313 OASLQ15646 514 aaKnown RBP7.16□□□□□ -1.26
NUP54-215ENST00000514313 ETFDHQ16134 617 aa7.16□□□□□ -1.26
NUP54-215ENST00000514313 ZNF674Q2M3X9 581 aa7.16□□□□□ -1.26
NUP54-215ENST00000514313 Q75L30 129 aa7.16□□□□□ -1.26
NUP54-215ENST00000514313 MEPCEQ7L2J0 689 aaKnown RBP7.16□□□□□ -1.26
NUP54-215ENST00000514313 SIX6OS1Q8N1H7 587 aa7.16□□□□□ -1.26
NUP54-215ENST00000514313 C1orf52Q8N6N3 182 aaKnown RBP7.16□□□□□ -1.26
NUP54-215ENST00000514313 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.16□□□□□ -1.26
NUP54-215ENST00000514313 OR14A16Q8NHC5 309 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms