RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 SCML2Q9UQR0 700 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 GRID2IPA4D2P6 1211 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 C5orf60A6NFR6 353 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 SIGLEC16A6NMB1 481 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 RFPL3O75679 317 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 EPN2O95208 641 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 ENO3P13929 434 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 RANBP1P43487 201 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 CCR8P51685 355 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 ARFIP2P53365 341 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 SNCBQ16143 134 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 PEG10Q86TG7 708 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 ULK2Q8IYT8 1036 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 ITFG1Q8TB96 612 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 ZCCHC14Q8WYQ9 949 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 EXOSC8Q96B26 276 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 VCPIP1Q96JH7 1222 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 DHRS1Q96LJ7 313 aa9.1□□□□□ -0.95
LIMCH1-202ENST00000381753 ILVBLA1L0T0 632 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 SEC14L5O43304 696 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 ARHGEF9O43307 516 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 ZNF208O43345 1280 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 BRINP1O60477 761 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 ZNF30P17039 623 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 DIO3P55073 304 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 PPM1JQ5JR12 505 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 C11orf88Q6PI97 169 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 ESX1Q8N693 406 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 C1orf127Q8N9H9 656 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 MDGA1Q8NFP4 955 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 PTCHD1Q96NR3 888 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 LYVE1Q9Y5Y7 322 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 MATN2O00339 956 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 PI15O43692 258 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 GLRA3O75311 464 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 NTRK1P04629 796 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 UQCRC1P31930 480 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 TNK2Q07912 1038 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 SLC10A6Q3KNW5 377 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 KHDC1LQ5JSQ8 128 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 DEPDC1Q5TB30 811 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 RTL4Q6ZR62 310 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 MEIOBQ8N635 442 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 COX18Q8N8Q8 333 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 TTC34A8MYJ7 566 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 ZNF185O15231 689 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 SIN3BO75182 1162 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 IL10RBQ08334 325 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 CYLC2Q14093 348 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 CRYMQ14894 314 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 ARMC4Q5T2S8 1044 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 SERPINA9Q86WD7 417 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 ZNF761Q86XN6 746 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 FAM174AQ8TBP5 190 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 SLC25A23Q9BV35 468 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 MLXIPLQ9NP71 852 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 CNTN3Q9P232 1028 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 SPEF1Q9Y4P9 236 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 KLRC4-KLRK1H3BQV0 150 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 MYO1CO00159 1063 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 IL32P24001 234 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 ACTR3P61158 418 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 BTN3A2P78410 334 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 CSTF3Q12996 717 aaKnown RBP9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 PKP1Q13835 747 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 HYIQ5T013 277 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 IYDQ6PHW0 289 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 C15orf39Q6ZRI6 1047 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 FMR1NBQ8N0W7 255 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 TERB1Q8NA31 727 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 PRR7Q8TB68 274 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 HDAC10Q969S8 669 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 NECAB3Q96P71 396 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 LPAR4Q99677 370 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 BPIFA3Q9BQP9 254 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 TBC1D10AQ9BXI6 508 aa9.09□□□□□ -0.95
LIMCH1-202ENST00000381753 GRIN2DO15399 1336 aa9.08□□□□□ -0.96
LIMCH1-202ENST00000381753 F8VZ95 297 aa9.08□□□□□ -0.96
LIMCH1-202ENST00000381753 SCDO00767 359 aa9.08□□□□□ -0.96
LIMCH1-202ENST00000381753 AQP9O43315 295 aa9.08□□□□□ -0.96
LIMCH1-202ENST00000381753 TSHRP16473 764 aa9.08□□□□□ -0.96
LIMCH1-202ENST00000381753 CDH5P33151 784 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-202ENST00000381753 ADRA1BP35368 520 aa9.08□□□□□ -0.96
LIMCH1-202ENST00000381753 DNASE1L1P49184 302 aa9.08□□□□□ -0.96
LIMCH1-202ENST00000381753 MAPK12P53778 367 aa9.08□□□□□ -0.96
LIMCH1-202ENST00000381753 DSC2Q02487 901 aa9.08□□□□□ -0.96
LIMCH1-202ENST00000381753 NFYCQ13952 458 aa9.08□□□□□ -0.96
LIMCH1-202ENST00000381753 PUM1Q14671 1186 aaKnown RBP eCLIP9.08□□□□□ -0.96
LIMCH1-202ENST00000381753 SCARA3Q6AZY7 606 aa9.08□□□□□ -0.96
LIMCH1-202ENST00000381753 LRRC8AQ8IWT6 810 aa9.08□□□□□ -0.96
LIMCH1-202ENST00000381753 SLC22A15Q8IZD6 547 aa9.08□□□□□ -0.96
LIMCH1-202ENST00000381753 GPR151Q8TDV0 419 aa9.08□□□□□ -0.96
LIMCH1-202ENST00000381753 INPP5DQ92835 1189 aa9.08□□□□□ -0.96
LIMCH1-202ENST00000381753 MARCOQ9UEW3 520 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-202ENST00000381753 ZFR2Q9UPR6 939 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-202ENST00000381753 A0A087X1B8 175 aa9.08□□□□□ -0.96
LIMCH1-202ENST00000381753 C2orf78A6NCI8 922 aa9.08□□□□□ -0.96
LIMCH1-202ENST00000381753 TRIM49D1C9J1S8 452 aa9.08□□□□□ -0.96
LIMCH1-202ENST00000381753 E7ENQ6 273 aa9.08□□□□□ -0.96
LIMCH1-202ENST00000381753 SNAP91O60641 907 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms