RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 TRIM48Q8IWZ4 208 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 PPIL6Q8IXY8 311 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 SFRP1Q8N474 314 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 ARL14Q8N4G2 192 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 DCBLD1Q8N8Z6 715 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 RASGEF1AQ8N9B8 481 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 SLC37A2Q8TED4 501 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 SH3KBP1Q96B97 665 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 GFM1Q96RP9 751 aaKnown RBP12.79□□□□□ -0.36
CLK3-224ENST00000568605 MRM3Q9HC36 420 aaKnown RBP12.79□□□□□ -0.36
CLK3-224ENST00000568605 SARS2Q9NP81 518 aaKnown RBP12.79□□□□□ -0.36
CLK3-224ENST00000568605 TBC1D29Q9UFV1 150 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 PCYT1BQ9Y5K3 369 aaPredicted RBP12.79□□□□□ -0.36
CLK3-224ENST00000568605 ST14Q9Y5Y6 855 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 RNF215Q9Y6U7 377 aa12.79□□□□□ -0.36
CLK3-224ENST00000568605 TPRP12270 2363 aaKnown RBP12.78□□□□□ -0.36
CLK3-224ENST00000568605 IGLV3-16A0A075B6K0 115 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 FAM149AA5PLN7 773 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 D6RAR5 112 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 TMX2-CTNND1H3BSU7 103 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 CSO75390 466 aaKnown RBP12.78□□□□□ -0.36
CLK3-224ENST00000568605 GSTM1P09488 218 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 ATP1B2P14415 290 aaPredicted RBP12.78□□□□□ -0.36
CLK3-224ENST00000568605 MGAT1P26572 445 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 PBLDP30039 288 aaPredicted RBP12.78□□□□□ -0.36
CLK3-224ENST00000568605 NSG1P42857 185 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 PPM1FP49593 454 aaPredicted RBP12.78□□□□□ -0.36
CLK3-224ENST00000568605 PRLHRP49683 370 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 CTSCP53634 463 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 TERF1P54274 439 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 DR1Q01658 176 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 GSTM4Q03013 218 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 ACVR1Q04771 509 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 DHX34Q14147 1143 aaKnown RBP12.78□□□□□ -0.36
CLK3-224ENST00000568605 NR1D2Q14995 579 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 FASTKD1Q53R41 847 aaKnown RBP12.78□□□□□ -0.36
CLK3-224ENST00000568605 AGAP9Q5VTM2 703 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 CDCP2Q5VXM1 449 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 CASC4Q6P4E1 433 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 ZNF449Q6P9G9 518 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 TMEM220Q6QAJ8 160 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 SYT10Q6XYQ8 523 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 CERS6Q6ZMG9 384 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 DET1Q7L5Y6 550 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 ZNF547Q8IVP9 402 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 BEND7Q8N7W2 519 aaPredicted RBP12.78□□□□□ -0.36
CLK3-224ENST00000568605 MCUQ8NE86 351 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 OR13J1Q8NGT2 312 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 OR6P1Q8NGX9 317 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 PATE1Q8WXA2 126 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 CPT1BQ92523 772 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 SLC38A3Q99624 504 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.78□□□□□ -0.36
CLK3-224ENST00000568605 LRRN3Q9H3W5 708 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 SYBUQ9NX95 663 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 NEU2Q9Y3R4 380 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 AKAP13Q12802 2813 aa12.78□□□□□ -0.36
CLK3-224ENST00000568605 CCDC162PA2VCL2 907 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 A6NCN8 305 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 SMAPO00193 183 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 PFDN6O15212 129 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 DUX1O43812 170 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 TMEM63AO94886 807 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 AP2A2O94973 939 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 SLC35G4P0C7Q5 338 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 FOXN2P32314 431 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 GPLD1P80108 840 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 TARDBPQ13148 414 aaKnown RBP eCLIP12.77□□□□□ -0.373e-6■■■□□ 14.6
CLK3-224ENST00000568605 SEPT7Q16181 437 aaKnown RBP12.77□□□□□ -0.37
CLK3-224ENST00000568605 IYDQ6PHW0 289 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 WASH2PQ6VEQ5 465 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 PACS1Q6VY07 963 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 ZNF534Q76KX8 674 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 C11orf96Q7Z7L8 435 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 HOOK3Q86VS8 718 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 KLHL7Q8IXQ5 586 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 RBM12BQ8IXT5 1001 aaKnown RBP12.77□□□□□ -0.37
CLK3-224ENST00000568605 C17orf53Q8N3J3 647 aaPredicted RBP12.77□□□□□ -0.37
CLK3-224ENST00000568605 MPP5Q8N3R9 675 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 OTUD6BQ8N6M0 293 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 Q8N9G6 341 aaPredicted RBP12.77□□□□□ -0.37
CLK3-224ENST00000568605 OR2L2Q8NH16 312 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 OR4L1Q8NH43 312 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 OR10G6Q8NH81 332 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 HM13Q8TCT9 377 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 GATA6Q92908 595 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 HDAC10Q969S8 669 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 CXorf40BQ96DE9 158 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 AHCYL2Q96HN2 611 aaKnown RBP12.77□□□□□ -0.37
CLK3-224ENST00000568605 SGSM3Q96HU1 749 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 LINC00615Q96LM1 132 aaPredicted RBP12.77□□□□□ -0.37
CLK3-224ENST00000568605 C16orf45Q96MC5 204 aaPredicted RBP12.77□□□□□ -0.37
CLK3-224ENST00000568605 TMEM74Q96NL1 305 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 SERPINB12Q96P63 405 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 DPYSL5Q9BPU6 564 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 TSSK1BQ9BXA7 367 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 STRADBQ9C0K7 418 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 EPB41L1Q9H4G0 881 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 FAM96AQ9H5X1 160 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 WASH6PQ9NQA3 447 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms