RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	STN1	Q9H668	368 aa	Known RBP	10.9	□□□□□ -0.66
DDB1-222	ENST00000543627	RDH14	Q9HBH5	336 aa		10.9	□□□□□ -0.66
DDB1-222	ENST00000543627	ARNT2	Q9HBZ2	717 aa		10.9	□□□□□ -0.66
DDB1-222	ENST00000543627	EPB41L5	Q9HCM4	733 aa		10.9	□□□□□ -0.66
DDB1-222	ENST00000543627	NFKBIL1	Q9UBC1	381 aa	Predicted RBP	10.9	□□□□□ -0.66
DDB1-222	ENST00000543627	SNX12	Q9UMY4	172 aa		10.9	□□□□□ -0.66
DDB1-222	ENST00000543627	PSMD13	Q9UNM6	376 aa		10.9	□□□□□ -0.66
DDB1-222	ENST00000543627	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	10.9	□□□□□ -0.66
DDB1-222	ENST00000543627	PTPRB	P23467	1997 aa		10.9	□□□□□ -0.66
DDB1-222	ENST00000543627	GOLGA6L10	A0A0M3HER8	536 aa		10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	FAM221B	A6H8Z2	402 aa		10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	OR51F1	A6NGY5	319 aa		10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	ERI2	A8K979	691 aa	Known RBP	10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	GAPDHS	O14556	408 aa	Predicted RBP	10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	PPM1D	O15297	605 aa		10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	ZW10	O43264	779 aa		10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	MPO	P05164	745 aa		10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	RALB	P11234	206 aa		10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	IDS	P22304	550 aa		10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	MPST	P25325	297 aa		10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	COIL	P38432	576 aa	Predicted RBP	10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	ZNF140	P52738	457 aa	Predicted RBP	10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	CTSC	P53634	463 aa		10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	CRADD	P78560	199 aa		10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	MSLN	Q13421	630 aa	Predicted RBP	10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	SEMA5A	Q13591	1074 aa		10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	SKIDA1	Q1XH10	827 aa		10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	ISX	Q2M1V0	245 aa		10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	C3orf38	Q5JPI3	329 aa		10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	SNAP47	Q5SQN1	464 aa		10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	PHF19	Q5T6S3	580 aa		10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	TTC27	Q6P3X3	843 aa		10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	DRICH1	Q6PGQ1	229 aa	Predicted RBP	10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	SNX20	Q7Z614	316 aa		10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	AMZ2	Q86W34	360 aa		10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	RASGEF1C	Q8N431	466 aa		10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	PPHLN1	Q8NEY8	458 aa	Known RBP	10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	OR6P1	Q8NGX9	317 aa		10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	SLC37A2	Q8TED4	501 aa		10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	CDKN2AIPNL	Q96HQ2	116 aa		10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	NLE1	Q9NVX2	485 aa	Predicted RBP	10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	KCNK4	Q9NYG8	393 aa		10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	ZMIZ1	Q9ULJ6	1067 aa		10.89	□□□□□ -0.67
DDB1-222	ENST00000543627	PLXNB3	Q9ULL4	1909 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	ASXL3	Q9C0F0	2248 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627		A0A1W2PQM1	296 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	HEATR9	A2RTY3	570 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627		A8MU76	341 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	CFAP99	D6REC4	459 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	GOLGA8M	H3BSY2	632 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	B4GAT1	O43505	415 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	NUDT21	O43809	227 aa	Known RBP	10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	VIP	P01282	170 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	POLB	P06746	335 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	SLC2A4	P14672	509 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	ADRA1D	P25100	572 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	GABRE	P78334	506 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	XIAP	P98170	497 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	HHEX	Q03014	270 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	PPP1R7	Q15435	360 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	CDCP2	Q5VXM1	449 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	CASC4	Q6P4E1	433 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	IYD	Q6PHW0	289 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	C4orf22	Q6V702	233 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	SPRED1	Q7Z699	444 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	SLC9B2	Q86UD5	537 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	PIM3	Q86V86	326 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	SERPINA9	Q86WD7	417 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	ZNF547	Q8IVP9	402 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	KLHL7	Q8IXQ5	586 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	CFAP206	Q8IYR0	622 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	OTUD6B	Q8N6M0	293 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	DCBLD1	Q8N8Z6	715 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	DDHD1	Q8NEL9	900 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	WDR48	Q8TAF3	677 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	HDAC10	Q969S8	669 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	ULK4	Q96C45	1275 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	CXorf40B	Q96DE9	158 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	DCBLD2	Q96PD2	775 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	COPS8	Q99627	209 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	NAPG	Q99747	312 aa	Predicted RBP	10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	CASS4	Q9NQ75	786 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	SLC2A6	Q9UGQ3	507 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	SATB2	Q9UPW6	733 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	AKAP13	Q12802	2813 aa		10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	10.88	□□□□□ -0.67
DDB1-222	ENST00000543627	RP1	P56715	2156 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	FRY	Q5TBA9	3013 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	TCRBV7S3A2	A0A539	114 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	CCDC162P	A2VCL2	907 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	CTAGE9	A4FU28	777 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	OR52A4P	A6NMU1	304 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	GPR89A	B7ZAQ6	455 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	CHUK	O15111	745 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	PHF2	O75151	1096 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	SUN1	O94901	812 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	GPR89B	P0CG08	455 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	F3	P13726	295 aa		10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	TCP1	P17987	556 aa	Known RBP	10.87	□□□□□ -0.67
DDB1-222	ENST00000543627	MGAT1	P26572	445 aa		10.87	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms