RNA–Protein interactions for RNA: ENST00000518743.1

HMGB1P23-201, Transcript of high mobility group box 1 pseudogene 23, humanhuman

BASIC

Gene HMGB1P23, Length 568 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P23-201ENST00000518743 SUCLA2Q9P2R7 463 aaPredicted RBP4.84□□□□□ -1.63
HMGB1P23-201ENST00000518743 A4GNTQ9UNA3 340 aa4.84□□□□□ -1.63
HMGB1P23-201ENST00000518743 ZNF711Q9Y462 761 aa4.84□□□□□ -1.63
HMGB1P23-201ENST00000518743 FN1P02751 2386 aaKnown RBP4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 CENPVL1A0A0U1RR11 272 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 A8MZ25 164 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 VWC2LB2RUY7 222 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 KCNJ18B7U540 433 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 CHL1O00533 1208 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 PRYO14603 147 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 TGFB1I1O43294 461 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 PAGE4O60829 102 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 GCATO75600 419 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 ERAL1O75616 437 aaKnown RBP4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 KAT7O95251 611 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 BAG3O95817 575 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 IL1AP01583 271 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 LCKP06239 509 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 ADRB2P07550 413 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 PCNAP12004 261 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 PEPDP12955 493 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 LYL1P12980 280 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 EPCAMP16422 314 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 PTPN2P17706 415 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 TBXAS1P24557 533 aaPredicted RBP4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 HOXA13P31271 388 aaPredicted RBP4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 MRPL12P52815 198 aaKnown RBP4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 TERF1P54274 439 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 TFAP4Q01664 338 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 OLIG2Q13516 323 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 SEMA3AQ14563 771 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 SMC1AQ14683 1233 aaKnown RBP4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 VEPH1Q14D04 833 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 LARS2Q15031 903 aaKnown RBP4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 TTI2Q6NXR4 508 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 CEP85Q6P2H3 762 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 ZNF585AQ6P3V2 769 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 SLC30A9Q6PML9 568 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 CPLX2Q6PUV4 134 aaKnown RBP4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 CCNI2Q6ZMN8 369 aaPredicted RBP4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 CHST9Q7L1S5 443 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 BCDIN3DQ7Z5W3 292 aaKnown RBP4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 KBTBD6Q86V97 674 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 VSIG1Q86XK7 387 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 HACE1Q8IYU2 909 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 PAQR4Q8N4S7 273 aaPredicted RBP4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 PLD5Q8N7P1 536 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 SCAIQ8N9R8 606 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 AVL9Q8NBF6 648 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 SETD9Q8NE22 299 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 GSDMBQ8TAX9 411 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 PROKR1Q8TCW9 393 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 C2CD4CQ8TF44 421 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 ASB10Q8WXI3 467 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 CLDN23Q96B33 292 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 ZNF764Q96H86 408 aaPredicted RBP4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 KAZALD1Q96I82 304 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 SEMA4CQ9C0C4 833 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 NUAK2Q9H093 628 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 PNNQ9H307 717 aaKnown RBP4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 ERVMER34-1Q9H9K5 563 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 ASAH2Q9NR71 780 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 CPSF2Q9P2I0 782 aaKnown RBP4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 UPB1Q9UBR1 384 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 GIMAP2Q9UG22 337 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 SLC8A2Q9UPR5 921 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 PCDHGB5Q9Y5G0 923 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 PCDHGA5Q9Y5G8 931 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 MAGED1Q9Y5V3 778 aaPredicted RBP4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 MYH8P13535 1937 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 FOCADQ5VW36 1801 aa4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 ANKHD1Q8IWZ3 2542 aaKnown RBP4.83□□□□□ -1.64
HMGB1P23-201ENST00000518743 NUP205Q92621 2012 aa4.82□□□□□ -1.64
HMGB1P23-201ENST00000518743 KRTAP4-8A0A0G2JLE6 195 aa4.82□□□□□ -1.64
HMGB1P23-201ENST00000518743 A0A1W2PQ09 198 aa4.82□□□□□ -1.64
HMGB1P23-201ENST00000518743 FRMD3A2A2Y4 597 aa4.82□□□□□ -1.64
HMGB1P23-201ENST00000518743 TSPY2A6NKD2 308 aa4.82□□□□□ -1.64
HMGB1P23-201ENST00000518743 SH2B2O14492 632 aaPredicted RBP4.82□□□□□ -1.64
HMGB1P23-201ENST00000518743 RRP8O43159 456 aaKnown RBP4.82□□□□□ -1.64
HMGB1P23-201ENST00000518743 PRICKLE3O43900 615 aaPredicted RBP4.82□□□□□ -1.64
HMGB1P23-201ENST00000518743 DIAPH2O60879 1101 aa4.82□□□□□ -1.64
HMGB1P23-201ENST00000518743 N4BP1O75113 896 aaKnown RBP4.82□□□□□ -1.64
HMGB1P23-201ENST00000518743 TACC1O75410 805 aa4.82□□□□□ -1.64
HMGB1P23-201ENST00000518743 CAVIN2O95810 425 aa4.82□□□□□ -1.64
HMGB1P23-201ENST00000518743 RFPL3SP0C7P2 107 aa4.82□□□□□ -1.64
HMGB1P23-201ENST00000518743 STAG3L1P0CL83 205 aa4.82□□□□□ -1.64
HMGB1P23-201ENST00000518743 TSPY3P0CV98 308 aa4.82□□□□□ -1.64
HMGB1P23-201ENST00000518743 TSPY8P0CW00 308 aa4.82□□□□□ -1.64
HMGB1P23-201ENST00000518743 SCG2P13521 617 aa4.82□□□□□ -1.64
HMGB1P23-201ENST00000518743 RARGP13631 454 aa4.82□□□□□ -1.64
HMGB1P23-201ENST00000518743 CASTP20810 708 aaKnown RBP4.82□□□□□ -1.64
HMGB1P23-201ENST00000518743 NR4A1P22736 598 aa4.82□□□□□ -1.64
HMGB1P23-201ENST00000518743 MCM3P25205 808 aa4.82□□□□□ -1.64
HMGB1P23-201ENST00000518743 TNFRSF8P28908 595 aa4.82□□□□□ -1.64
HMGB1P23-201ENST00000518743 PCSK6P29122 969 aa4.82□□□□□ -1.64
HMGB1P23-201ENST00000518743 TYK2P29597 1187 aa4.82□□□□□ -1.64
HMGB1P23-201ENST00000518743 HOXA4Q00056 320 aaPredicted RBP4.82□□□□□ -1.64
HMGB1P23-201ENST00000518743 TSPY1Q01534 308 aa4.82□□□□□ -1.64
HMGB1P23-201ENST00000518743 PLK5Q496M5 336 aa4.82□□□□□ -1.64
HMGB1P23-201ENST00000518743 USP39Q53GS9 565 aaKnown RBP4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms