RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 SIPA1Q96FS4 1042 aa18.43■□□□□ 0.54
CLN3-206ENST00000360019 GPR21Q99679 349 aa18.43■□□□□ 0.54
CLN3-206ENST00000360019 SLC30A3Q99726 388 aa18.43■□□□□ 0.54
CLN3-206ENST00000360019 UNKQ9C0B0 810 aaKnown RBP18.43■□□□□ 0.54
CLN3-206ENST00000360019 THEGQ9P2T0 379 aa18.43■□□□□ 0.54
CLN3-206ENST00000360019 WNT16Q9UBV4 365 aa18.43■□□□□ 0.54
CLN3-206ENST00000360019 COMMD10Q9Y6G5 202 aa18.43■□□□□ 0.54
CLN3-206ENST00000360019 WDR91A4D1P6 747 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 ZNF37AP17032 561 aaPredicted RBP18.42■□□□□ 0.54
CLN3-206ENST00000360019 CD9P21926 228 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 ZBTB16Q05516 673 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 CCDC15Q0P6D6 951 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 PDAP1Q13442 181 aaKnown RBP18.42■□□□□ 0.54
CLN3-206ENST00000360019 CSHL1Q14406 222 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 TERF2Q15554 542 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 ZNF765Q7L2R6 523 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 TBC1D1Q86TI0 1168 aaPredicted RBP18.42■□□□□ 0.54
CLN3-206ENST00000360019 LCA5Q86VQ0 697 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 GIMAP7Q8NHV1 300 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 GANCQ8TET4 914 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 MAGEB18Q96M61 343 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 MECRQ9BV79 373 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 SCML1Q9UN30 329 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 RUVBL2Q9Y230 463 aaKnown RBP18.42■□□□□ 0.54
CLN3-206ENST00000360019 OAS3Q9Y6K5 1087 aaKnown RBP18.42■□□□□ 0.54
CLN3-206ENST00000360019 NUMA1Q14980 2115 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 TCRBV21S2A2A0A5A6 115 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 K7ESM1 405 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 PLRG1O43660 514 aaKnown RBP18.42■□□□□ 0.54
CLN3-206ENST00000360019 PCDH8O95206 1070 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 CCDC166P0CW27 439 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 NDUFV2P19404 249 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 NSG1P42857 185 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 GLRBP48167 497 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 SEC24CP53992 1094 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 PDK4Q16654 411 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 CCDC153Q494R4 210 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 KHDC1Q4VXA5 237 aaKnown RBP18.42■□□□□ 0.54
CLN3-206ENST00000360019 CCDC91Q7Z6B0 441 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 TMEM151AQ8N4L1 468 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 DDHD1Q8NEL9 900 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 LKAAEAR1Q8TD35 194 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 HEXDCQ8WVB3 486 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 VPS35Q96QK1 796 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 NMRAL1Q9HBL8 299 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 CD93Q9NPY3 652 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 MBD1Q9UIS9 605 aaPredicted RBP18.42■□□□□ 0.54
CLN3-206ENST00000360019 GNPTGQ9UJJ9 305 aa18.42■□□□□ 0.54
CLN3-206ENST00000360019 IGLON5A6NGN9 336 aa18.41■□□□□ 0.54
CLN3-206ENST00000360019 MTX2O75431 263 aa18.41■□□□□ 0.54
CLN3-206ENST00000360019 VPS26AO75436 327 aa18.41■□□□□ 0.54
CLN3-206ENST00000360019 SBK3P0C264 359 aa18.41■□□□□ 0.54
CLN3-206ENST00000360019 CHRM3P20309 590 aa18.41■□□□□ 0.54
CLN3-206ENST00000360019 SLC26A3P40879 764 aa18.41■□□□□ 0.54
CLN3-206ENST00000360019 STARD6P59095 220 aa18.41■□□□□ 0.54
CLN3-206ENST00000360019 GABPB1Q06547 395 aaPredicted RBP18.41■□□□□ 0.54
CLN3-206ENST00000360019 DPTQ07507 201 aa18.41■□□□□ 0.54
CLN3-206ENST00000360019 FZD5Q13467 585 aa18.41■□□□□ 0.54
CLN3-206ENST00000360019 TTC31Q49AM3 519 aaPredicted RBP18.41■□□□□ 0.54
CLN3-206ENST00000360019 SEL1L3Q68CR1 1132 aa18.41■□□□□ 0.54
CLN3-206ENST00000360019 PTRHD1Q6GMV3 140 aaKnown RBP18.41■□□□□ 0.54
CLN3-206ENST00000360019 PAQR3Q6TCH7 311 aa18.41■□□□□ 0.54
CLN3-206ENST00000360019 MACC1Q6ZN28 852 aa18.41■□□□□ 0.54
CLN3-206ENST00000360019 FSTL5Q8N475 847 aaPredicted RBP18.41■□□□□ 0.54
CLN3-206ENST00000360019 SIDT2Q8NBJ9 832 aaKnown RBP18.41■□□□□ 0.54
CLN3-206ENST00000360019 CD200R1Q8TD46 325 aa18.41■□□□□ 0.54
CLN3-206ENST00000360019 BTN2A2Q8WVV5 523 aa18.41■□□□□ 0.54
CLN3-206ENST00000360019 GLYATL1Q969I3 302 aa18.41■□□□□ 0.54
CLN3-206ENST00000360019 TSNARE1Q96NA8 513 aa18.41■□□□□ 0.54
CLN3-206ENST00000360019 ZNF317Q96PQ6 595 aaPredicted RBP18.41■□□□□ 0.54
CLN3-206ENST00000360019 LMAN1LQ9HAT1 526 aa18.41■□□□□ 0.54
CLN3-206ENST00000360019 LTB4R2Q9NPC1 389 aa18.41■□□□□ 0.54
CLN3-206ENST00000360019 FBXL21Q9UKT6 434 aa18.41■□□□□ 0.54
CLN3-206ENST00000360019 ZFR2Q9UPR6 939 aaKnown RBP18.41■□□□□ 0.54
CLN3-206ENST00000360019 E5RI56 91 aa18.4■□□□□ 0.54
CLN3-206ENST00000360019 TK2O00142 265 aa18.4■□□□□ 0.54
CLN3-206ENST00000360019 BPGMP07738 259 aa18.4■□□□□ 0.54
CLN3-206ENST00000360019 LTA4HP09960 611 aaKnown RBP18.4■□□□□ 0.54
CLN3-206ENST00000360019 GABRG2P18507 467 aa18.4■□□□□ 0.54
CLN3-206ENST00000360019 CLCN7P51798 805 aa18.4■□□□□ 0.54
CLN3-206ENST00000360019 ADPRHP54922 357 aa18.4■□□□□ 0.54
CLN3-206ENST00000360019 TSNAXIP1Q2TAA8 658 aa18.4■□□□□ 0.54
CLN3-206ENST00000360019 LRRC8EQ6NSJ5 796 aa18.4■□□□□ 0.54
CLN3-206ENST00000360019 CCDC63Q8NA47 563 aa18.4■□□□□ 0.54
CLN3-206ENST00000360019 FLCNQ8NFG4 579 aa18.4■□□□□ 0.54
CLN3-206ENST00000360019 OR14C36Q8NHC7 312 aa18.4■□□□□ 0.54
CLN3-206ENST00000360019 C2orf42Q9NWW7 574 aa18.4■□□□□ 0.54
CLN3-206ENST00000360019 CPSF2Q9P2I0 782 aaKnown RBP18.4■□□□□ 0.54
CLN3-206ENST00000360019 CNOT6Q9ULM6 557 aaKnown RBP18.4■□□□□ 0.54
CLN3-206ENST00000360019 TRPM6Q9BX84 2022 aa18.4■□□□□ 0.54
CLN3-206ENST00000360019 TM7SF2O76062 418 aa18.39■□□□□ 0.54
CLN3-206ENST00000360019 PYGLP06737 847 aa18.39■□□□□ 0.54
CLN3-206ENST00000360019 TAC1P20366 129 aa18.39■□□□□ 0.54
CLN3-206ENST00000360019 GAS6Q14393 721 aa18.39■□□□□ 0.54
CLN3-206ENST00000360019 UBXN2BQ14CS0 331 aa18.39■□□□□ 0.54
CLN3-206ENST00000360019 PCLAFQ15004 111 aa18.39■□□□□ 0.54
CLN3-206ENST00000360019 FAM83EQ2M2I3 478 aa18.39■□□□□ 0.54
CLN3-206ENST00000360019 ZNF648Q5T619 568 aaPredicted RBP18.39■□□□□ 0.54
CLN3-206ENST00000360019 KIAA1324Q6UXG2 1013 aaKnown RBP18.39■□□□□ 0.54
CLN3-206ENST00000360019 NLRP8Q86W28 1048 aa18.39■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms