RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 HGFP14210 728 aa18.88■□□□□ 0.61
CCDC28A-203ENST00000617445 TNNT3P45378 269 aaPredicted RBP18.88■□□□□ 0.61
CCDC28A-203ENST00000617445 CLCNKAP51800 687 aa18.88■□□□□ 0.61
CCDC28A-203ENST00000617445 PCSK7Q16549 785 aa18.88■□□□□ 0.61
CCDC28A-203ENST00000617445 ZNF569Q5MCW4 686 aa18.88■□□□□ 0.61
CCDC28A-203ENST00000617445 CCDC81Q6ZN84 652 aa18.88■□□□□ 0.61
CCDC28A-203ENST00000617445 CHST15Q7LFX5 561 aaPredicted RBP18.88■□□□□ 0.61
CCDC28A-203ENST00000617445 KDELC2Q7Z4H8 507 aa18.88■□□□□ 0.61
CCDC28A-203ENST00000617445 EID2BQ96D98 161 aa18.88■□□□□ 0.61
CCDC28A-203ENST00000617445 PANX2Q96RD6 677 aa18.88■□□□□ 0.61
CCDC28A-203ENST00000617445 TRABDQ9H4I3 376 aa18.88■□□□□ 0.61
CCDC28A-203ENST00000617445 SHOC2Q9UQ13 582 aa18.88■□□□□ 0.61
CCDC28A-203ENST00000617445 ZNF711Q9Y462 761 aa18.88■□□□□ 0.61
CCDC28A-203ENST00000617445 KIR2DS5A0A0G2JLQ3 304 aa18.87■□□□□ 0.61
CCDC28A-203ENST00000617445 A0A0G2JNG1 304 aa18.87■□□□□ 0.61
CCDC28A-203ENST00000617445 IGHV5-10-1A0A0J9YXX1 117 aa18.87■□□□□ 0.61
CCDC28A-203ENST00000617445 COL6A6A6NMZ7 2263 aa18.87■□□□□ 0.61
CCDC28A-203ENST00000617445 KIR2DS3K7RE56 304 aa18.87■□□□□ 0.61
CCDC28A-203ENST00000617445 MT-CYBP00156 380 aaPredicted RBP18.87■□□□□ 0.61
CCDC28A-203ENST00000617445 LIPCP11150 499 aa18.87■□□□□ 0.61
CCDC28A-203ENST00000617445 C19orf57Q0VDD7 668 aa18.87■□□□□ 0.61
CCDC28A-203ENST00000617445 KIR2DS5Q14953 304 aa18.87■□□□□ 0.61
CCDC28A-203ENST00000617445 PPP2R5EQ16537 467 aa18.87■□□□□ 0.61
CCDC28A-203ENST00000617445 CHCHD2P9Q5T1J5 151 aaPredicted RBP18.87■□□□□ 0.61
CCDC28A-203ENST00000617445 ZDHHC20Q5W0Z9 365 aa18.87■□□□□ 0.61
CCDC28A-203ENST00000617445 KAZNQ674X7 775 aa18.87■□□□□ 0.61
CCDC28A-203ENST00000617445 TMEM71Q6P5X7 295 aa18.87■□□□□ 0.61
CCDC28A-203ENST00000617445 IYDQ6PHW0 289 aa18.87■□□□□ 0.61
CCDC28A-203ENST00000617445 ZNF574Q6ZN55 896 aaPredicted RBP18.87■□□□□ 0.61
CCDC28A-203ENST00000617445 GPR26Q8NDV2 337 aa18.87■□□□□ 0.61
CCDC28A-203ENST00000617445 CCDC112Q8NEF3 446 aa18.87■□□□□ 0.61
CCDC28A-203ENST00000617445 OR10G6Q8NH81 332 aa18.87■□□□□ 0.61
CCDC28A-203ENST00000617445 SPATA22Q8NHS9 363 aa18.87■□□□□ 0.61
CCDC28A-203ENST00000617445 SLC37A2Q8TED4 501 aa18.87■□□□□ 0.61
CCDC28A-203ENST00000617445 GLYATL1Q969I3 302 aa18.87■□□□□ 0.61
CCDC28A-203ENST00000617445 AHCYL2Q96HN2 611 aaKnown RBP18.87■□□□□ 0.61
CCDC28A-203ENST00000617445 PLEKHG4BQ96PX9 1271 aa18.87■□□□□ 0.61
CCDC28A-203ENST00000617445 SLC38A3Q99624 504 aa18.87■□□□□ 0.61
CCDC28A-203ENST00000617445 NUDT22Q9BRQ3 303 aa18.87■□□□□ 0.61
CCDC28A-203ENST00000617445 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP18.87■□□□□ 0.61
CCDC28A-203ENST00000617445 ATXN10Q9UBB4 475 aa18.87■□□□□ 0.61
CCDC28A-203ENST00000617445 SAE1Q9UBE0 346 aaPredicted RBP18.87■□□□□ 0.61
CCDC28A-203ENST00000617445 TRHDEQ9UKU6 1024 aa18.87■□□□□ 0.61
CCDC28A-203ENST00000617445 KALRNO60229 2985 aa18.87■□□□□ 0.61
CCDC28A-203ENST00000617445 hCG_1818297A0A087WSY0 165 aa18.86■□□□□ 0.61
CCDC28A-203ENST00000617445 LOC285095A0A1B0GVY8 99 aa18.86■□□□□ 0.61
CCDC28A-203ENST00000617445 VEGFDO43915 354 aa18.86■□□□□ 0.61
CCDC28A-203ENST00000617445 PMPCBO75439 489 aa18.86■□□□□ 0.61
CCDC28A-203ENST00000617445 IPO7O95373 1038 aaKnown RBP18.86■□□□□ 0.61
CCDC28A-203ENST00000617445 ITIH1P19827 911 aa18.86■□□□□ 0.61
CCDC28A-203ENST00000617445 HMGCLP35914 325 aa18.86■□□□□ 0.61
CCDC28A-203ENST00000617445 COPS2P61201 443 aa18.86■□□□□ 0.61
CCDC28A-203ENST00000617445 HHEXQ03014 270 aa18.86■□□□□ 0.61
CCDC28A-203ENST00000617445 WASHC5Q12768 1159 aa18.86■□□□□ 0.61
CCDC28A-203ENST00000617445 XRCC4Q13426 336 aa18.86■□□□□ 0.61
CCDC28A-203ENST00000617445 C16orf72Q14CZ0 275 aa18.86■□□□□ 0.61
CCDC28A-203ENST00000617445 SLC9B2Q86UD5 537 aa18.86■□□□□ 0.61
CCDC28A-203ENST00000617445 TMTC1Q8IUR5 882 aa18.86■□□□□ 0.61
CCDC28A-203ENST00000617445 PHYKPLQ8IUZ5 450 aa18.86■□□□□ 0.61
CCDC28A-203ENST00000617445 AGBL5Q8NDL9 886 aa18.86■□□□□ 0.61
CCDC28A-203ENST00000617445 DTX3LQ8TDB6 740 aa18.86■□□□□ 0.61
CCDC28A-203ENST00000617445 USP7Q93009 1102 aa18.86■□□□□ 0.61
CCDC28A-203ENST00000617445 MRFAP1L1Q96HT8 127 aa18.86■□□□□ 0.61
CCDC28A-203ENST00000617445 FCRL5Q96RD9 977 aa18.86■□□□□ 0.61
CCDC28A-203ENST00000617445 FERMT1Q9BQL6 677 aa18.86■□□□□ 0.61
CCDC28A-203ENST00000617445 LDHAL6BQ9BYZ2 381 aaPredicted RBP18.86■□□□□ 0.61
CCDC28A-203ENST00000617445 EPB41L1Q9H4G0 881 aa18.86■□□□□ 0.61
CCDC28A-203ENST00000617445 HACD3Q9P035 362 aa18.86■□□□□ 0.61
CCDC28A-203ENST00000617445 TBC1D29Q9UFV1 150 aa18.86■□□□□ 0.61
CCDC28A-203ENST00000617445 PCDHB11Q9Y5F2 797 aa18.86■□□□□ 0.61
CCDC28A-203ENST00000617445 PRAMEF33A0A0G2JMD5 474 aa18.85■□□□□ 0.61
CCDC28A-203ENST00000617445 IQCJ-SCHIP1C9J366 451 aaPredicted RBP18.85■□□□□ 0.61
CCDC28A-203ENST00000617445 CHUKO15111 745 aa18.85■□□□□ 0.61
CCDC28A-203ENST00000617445 DUX1O43812 170 aa18.85■□□□□ 0.61
CCDC28A-203ENST00000617445 PRAMEF10O60809 474 aa18.85■□□□□ 0.61
CCDC28A-203ENST00000617445 PIRTP0C851 137 aa18.85■□□□□ 0.61
CCDC28A-203ENST00000617445 ACP5P13686 325 aa18.85■□□□□ 0.61
CCDC28A-203ENST00000617445 F3P13726 295 aa18.85■□□□□ 0.61
CCDC28A-203ENST00000617445 PECAM1P16284 738 aaPredicted RBP18.85■□□□□ 0.61
CCDC28A-203ENST00000617445 ZNF8P17098 575 aaPredicted RBP18.85■□□□□ 0.61
CCDC28A-203ENST00000617445 CSTF2P33240 577 aaKnown RBP eCLIP18.85■□□□□ 0.61
CCDC28A-203ENST00000617445 MAPK10P53779 464 aa18.85■□□□□ 0.61
CCDC28A-203ENST00000617445 EPHA4P54764 986 aa18.85■□□□□ 0.61
CCDC28A-203ENST00000617445 TAF1BQ53T94 588 aaPredicted RBP18.85■□□□□ 0.61
CCDC28A-203ENST00000617445 WDR74Q6RFH5 385 aaPredicted RBP18.85■□□□□ 0.61
CCDC28A-203ENST00000617445 BBS12Q6ZW61 710 aa18.85■□□□□ 0.61
CCDC28A-203ENST00000617445 PID1Q7Z2X4 250 aa18.85■□□□□ 0.61
CCDC28A-203ENST00000617445 DAAM2Q86T65 1068 aa18.85■□□□□ 0.61
CCDC28A-203ENST00000617445 CCDC50Q8IVM0 306 aa18.85■□□□□ 0.61
CCDC28A-203ENST00000617445 HTR3CQ8WXA8 447 aa18.85■□□□□ 0.61
CCDC28A-203ENST00000617445 CCDC74BQ96LY2 380 aa18.85■□□□□ 0.61
CCDC28A-203ENST00000617445 VPS35Q96QK1 796 aa18.85■□□□□ 0.61
CCDC28A-203ENST00000617445 TAAR9Q96RI9 348 aa18.85■□□□□ 0.61
CCDC28A-203ENST00000617445 OR2AG1Q9H205 316 aa18.85■□□□□ 0.61
CCDC28A-203ENST00000617445 KLHL8Q9P2G9 620 aaPredicted RBP18.85■□□□□ 0.61
CCDC28A-203ENST00000617445 PDP2Q9P2J9 529 aa18.85■□□□□ 0.61
CCDC28A-203ENST00000617445 KCNK6Q9Y257 313 aa18.85■□□□□ 0.61
CCDC28A-203ENST00000617445 EFR3BQ9Y2G0 817 aa18.85■□□□□ 0.61
CCDC28A-203ENST00000617445 PRKAB1Q9Y478 270 aa18.85■□□□□ 0.61
CCDC28A-203ENST00000617445 PCDHGA3Q9Y5H0 932 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms