RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 GPR142Q7Z601 462 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 CADM3Q8N126 398 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 ACTRT2Q8TDY3 377 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 TAMM41Q96BW9 452 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 FAM136AQ96C01 138 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 THAP11Q96EK4 314 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 CDADC1Q9BWV3 514 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 C12orf10Q9HB07 376 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 SPON1Q9HCB6 807 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 SYTL2Q9HCH5 934 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 NUDT5Q9UKK9 219 aa10.41□□□□□ -0.74
LIG1-220ENST00000601091 TRIM38O00635 465 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 ZBTB14O43829 449 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 HNRNPLP14866 589 aaKnown RBP eCLIP10.4□□□□□ -0.74
LIG1-220ENST00000601091 GMPRP36959 345 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 RGS2P41220 211 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 OR1G1P47890 313 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 POU4F1Q01851 419 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 TAZQ16635 292 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 TRIM71Q2Q1W2 868 aaKnown RBP10.4□□□□□ -0.74
LIG1-220ENST00000601091 OTOP3Q7RTS5 596 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.4□□□□□ -0.74
LIG1-220ENST00000601091 LILRB4Q8NHJ6 448 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 DIS3LQ8TF46 1054 aaKnown RBP10.4□□□□□ -0.74
LIG1-220ENST00000601091 ULK4Q96C45 1275 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 SERPINB11Q96P15 392 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 DHRS9Q9BPW9 319 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 GLOD4Q9HC38 313 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 RGS18Q9NS28 235 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 RIC8BQ9NVN3 520 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 IL20Q9NYY1 176 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 CPA4Q9UI42 421 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 LRIG2O94898 1065 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 SCGB1D2O95969 90 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 CYP3A5P20815 502 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 TTKP33981 857 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 SCNN1GP51170 649 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 CARD18P57730 90 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 EFEMP1Q12805 493 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 SLC10A2Q12908 348 aaPredicted RBP10.4□□□□□ -0.74
LIG1-220ENST00000601091 FRG1Q14331 258 aaKnown RBP10.4□□□□□ -0.74
LIG1-220ENST00000601091 ZYG11AQ6WRX3 759 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 PGBD3Q8N328 593 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 ZNF786Q8N393 782 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 TEX47Q8TBZ9 253 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 ZNF845Q96IR2 970 aaPredicted RBP10.4□□□□□ -0.74
LIG1-220ENST00000601091 COX4I2Q96KJ9 171 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 ZFP42Q96MM3 310 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 SECISBP2Q96T21 854 aaKnown RBP10.4□□□□□ -0.74
LIG1-220ENST00000601091 TM9SF2Q99805 663 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 FBXW11Q9UKB1 542 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 PRG3Q9Y2Y8 225 aaPredicted RBP10.4□□□□□ -0.74
LIG1-220ENST00000601091 PCDHGB7Q9Y5F8 929 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 PSAT1Q9Y617 370 aa10.4□□□□□ -0.74
LIG1-220ENST00000601091 YJEFN3A6XGL0 299 aa10.4□□□□□ -0.75
LIG1-220ENST00000601091 B8ZZF3 427 aa10.4□□□□□ -0.75
LIG1-220ENST00000601091 ENDOD1O94919 500 aa10.4□□□□□ -0.75
LIG1-220ENST00000601091 SNRPB2P08579 225 aaKnown RBP10.4□□□□□ -0.75
LIG1-220ENST00000601091 PEX2P28328 305 aa10.4□□□□□ -0.75
LIG1-220ENST00000601091 DAOAP59103 153 aa10.4□□□□□ -0.75
LIG1-220ENST00000601091 NFE2Q16621 373 aaPredicted RBP10.4□□□□□ -0.75
LIG1-220ENST00000601091 NRF1Q16656 503 aa10.4□□□□□ -0.75
LIG1-220ENST00000601091 LSM12Q3MHD2 195 aaKnown RBP10.4□□□□□ -0.75
LIG1-220ENST00000601091 RALGPS2Q86X27 583 aaPredicted RBP10.4□□□□□ -0.75
LIG1-220ENST00000601091 ZNF540Q8NDQ6 660 aa10.4□□□□□ -0.75
LIG1-220ENST00000601091 TEKT5Q96M29 485 aa10.4□□□□□ -0.75
LIG1-220ENST00000601091 EGFL8Q99944 293 aa10.4□□□□□ -0.75
LIG1-220ENST00000601091 BRD9Q9H8M2 597 aa10.4□□□□□ -0.75
LIG1-220ENST00000601091 GIN1Q9NXP7 522 aa10.4□□□□□ -0.75
LIG1-220ENST00000601091 CD274Q9NZQ7 290 aa10.4□□□□□ -0.75
LIG1-220ENST00000601091 CNTN3Q9P232 1028 aa10.4□□□□□ -0.75
LIG1-220ENST00000601091 KCNN3Q9UGI6 736 aa10.4□□□□□ -0.75
LIG1-220ENST00000601091 WARS2Q9UGM6 360 aaKnown RBP10.4□□□□□ -0.75
LIG1-220ENST00000601091 SLX4Q8IY92 1834 aa10.4□□□□□ -0.75
LIG1-220ENST00000601091 SMCHD1A6NHR9 2005 aa10.39□□□□□ -0.75
LIG1-220ENST00000601091 MYH9P35579 1960 aaKnown RBP10.39□□□□□ -0.75
LIG1-220ENST00000601091 TSC22D2O75157 780 aa10.39□□□□□ -0.75
LIG1-220ENST00000601091 ALDOAP04075 364 aaKnown RBP10.39□□□□□ -0.75
LIG1-220ENST00000601091 KRT8P05787 483 aa10.39□□□□□ -0.75
LIG1-220ENST00000601091 CHRM3P20309 590 aa10.39□□□□□ -0.75
LIG1-220ENST00000601091 NMBRP28336 390 aa10.39□□□□□ -0.75
LIG1-220ENST00000601091 CLCN5P51795 746 aa10.39□□□□□ -0.75
LIG1-220ENST00000601091 SSTP61278 116 aa10.39□□□□□ -0.75
LIG1-220ENST00000601091 RAD51Q06609 339 aa10.39□□□□□ -0.75
LIG1-220ENST00000601091 IMPG1Q17R60 797 aa10.39□□□□□ -0.75
LIG1-220ENST00000601091 C6orf10Q5SRN2 563 aa10.39□□□□□ -0.75
LIG1-220ENST00000601091 OR52E8Q6IFG1 317 aa10.39□□□□□ -0.75
LIG1-220ENST00000601091 PAOXQ6QHF9 649 aa10.39□□□□□ -0.75
LIG1-220ENST00000601091 USP50Q70EL3 339 aaPredicted RBP10.39□□□□□ -0.75
LIG1-220ENST00000601091 C10orf53Q8N6V4 93 aa10.39□□□□□ -0.75
LIG1-220ENST00000601091 NXNL1Q96CM4 212 aa10.39□□□□□ -0.75
LIG1-220ENST00000601091 BTBD9Q96Q07 612 aa10.39□□□□□ -0.75
LIG1-220ENST00000601091 SEMA6AQ9H2E6 1030 aa10.39□□□□□ -0.75
LIG1-220ENST00000601091 PIGVQ9NUD9 493 aa10.39□□□□□ -0.75
LIG1-220ENST00000601091 VPS9D1Q9Y2B5 631 aa10.39□□□□□ -0.75
LIG1-220ENST00000601091 KANSL1LA0AUZ9 987 aa10.39□□□□□ -0.75
LIG1-220ENST00000601091 HCRTO43612 131 aa10.39□□□□□ -0.75
LIG1-220ENST00000601091 ADAM23O75077 832 aa10.39□□□□□ -0.75
LIG1-220ENST00000601091 IQCF3P0C7M6 154 aa10.39□□□□□ -0.75
LIG1-220ENST00000601091 FGF3P11487 239 aaPredicted RBP10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms