RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 RPLP0P05388 317 aaKnown RBP19.28■□□□□ 0.68
USP40-207ENST00000450940 CTBSQ01459 385 aa19.28■□□□□ 0.68
USP40-207ENST00000450940 ADCY2Q08462 1091 aa19.28■□□□□ 0.68
USP40-207ENST00000450940 PEX6Q13608 980 aa19.28■□□□□ 0.68
USP40-207ENST00000450940 NR1D2Q14995 579 aa19.28■□□□□ 0.68
USP40-207ENST00000450940 PYCR3Q53H96 274 aa19.28■□□□□ 0.68
USP40-207ENST00000450940 TFDP3Q5H9I0 405 aa19.28■□□□□ 0.68
USP40-207ENST00000450940 C3orf38Q5JPI3 329 aa19.28■□□□□ 0.68
USP40-207ENST00000450940 HENMT1Q5T8I9 393 aaKnown RBP19.28■□□□□ 0.68
USP40-207ENST00000450940 ZNF438Q7Z4V0 828 aa19.28■□□□□ 0.68
USP40-207ENST00000450940 CCNJLQ8IV13 435 aa19.28■□□□□ 0.68
USP40-207ENST00000450940 RCOR2Q8IZ40 523 aa19.28■□□□□ 0.68
USP40-207ENST00000450940 ZNF248Q8NDW4 579 aa19.28■□□□□ 0.68
USP40-207ENST00000450940 CCHCR1Q8TD31 782 aa19.28■□□□□ 0.68
USP40-207ENST00000450940 EID2BQ96D98 161 aa19.28■□□□□ 0.68
USP40-207ENST00000450940 FAM83DQ9H4H8 585 aa19.28■□□□□ 0.68
USP40-207ENST00000450940 GLOD4Q9HC38 313 aa19.28■□□□□ 0.68
USP40-207ENST00000450940 MAGEE1Q9HCI5 957 aa19.28■□□□□ 0.68
USP40-207ENST00000450940 LUC7LQ9NQ29 371 aaKnown RBP19.28■□□□□ 0.68
USP40-207ENST00000450940 SAE1Q9UBE0 346 aaPredicted RBP19.28■□□□□ 0.68
USP40-207ENST00000450940 TFR2Q9UP52 801 aa19.28■□□□□ 0.68
USP40-207ENST00000450940 TMEM98Q9Y2Y6 226 aa19.28■□□□□ 0.68
USP40-207ENST00000450940 EPN1Q9Y6I3 576 aaPredicted RBP19.28■□□□□ 0.68
USP40-207ENST00000450940 PECAM1P16284 738 aaPredicted RBP19.27■□□□□ 0.68
USP40-207ENST00000450940 PTPN3P26045 913 aa19.27■□□□□ 0.68
USP40-207ENST00000450940 AK4P27144 223 aaPredicted RBP19.27■□□□□ 0.68
USP40-207ENST00000450940 CCKBRP32239 447 aa19.27■□□□□ 0.68
USP40-207ENST00000450940 PCBP4P57723 403 aaKnown RBP19.27■□□□□ 0.68
USP40-207ENST00000450940 B4GALNT1Q00973 533 aa19.27■□□□□ 0.68
USP40-207ENST00000450940 CDK18Q07002 472 aa19.27■□□□□ 0.68
USP40-207ENST00000450940 FAM182AQ5T1J6 154 aa19.27■□□□□ 0.68
USP40-207ENST00000450940 SPRED1Q7Z699 444 aa19.27■□□□□ 0.68
USP40-207ENST00000450940 B3GNT8Q7Z7M8 397 aa19.27■□□□□ 0.68
USP40-207ENST00000450940 TMTC1Q8IUR5 882 aa19.27■□□□□ 0.68
USP40-207ENST00000450940 ZDHHC1Q8WTX9 485 aa19.27■□□□□ 0.68
USP40-207ENST00000450940 CRELD1Q96HD1 420 aa19.27■□□□□ 0.68
USP40-207ENST00000450940 CALR3Q96L12 384 aaKnown RBP19.27■□□□□ 0.68
USP40-207ENST00000450940 OR2M4Q96R27 311 aa19.27■□□□□ 0.68
USP40-207ENST00000450940 CDH19Q9H159 772 aa19.27■□□□□ 0.68
USP40-207ENST00000450940 THSD1Q9NS62 852 aa19.27■□□□□ 0.68
USP40-207ENST00000450940 PKD2L2Q9NZM6 624 aa19.27■□□□□ 0.68
USP40-207ENST00000450940 SEPT10Q9P0V9 454 aa19.27■□□□□ 0.68
USP40-207ENST00000450940 VPS18Q9P253 973 aa19.27■□□□□ 0.68
USP40-207ENST00000450940 NFKBIL1Q9UBC1 381 aaPredicted RBP19.27■□□□□ 0.68
USP40-207ENST00000450940 hCG_1818297A0A087WSY0 165 aa19.26■□□□□ 0.67
USP40-207ENST00000450940 CDRT15L2A8MXV6 281 aa19.26■□□□□ 0.67
USP40-207ENST00000450940 MTSS1O43312 755 aa19.26■□□□□ 0.67
USP40-207ENST00000450940 NDUFA10O95299 355 aa19.26■□□□□ 0.67
USP40-207ENST00000450940 TLE3Q04726 772 aa19.26■□□□□ 0.67
USP40-207ENST00000450940 ZFP36L1Q07352 338 aaKnown RBP19.26■□□□□ 0.67
USP40-207ENST00000450940 WASHC5Q12768 1159 aa19.26■□□□□ 0.67
USP40-207ENST00000450940 EIF3IQ13347 325 aaKnown RBP19.26■□□□□ 0.67
USP40-207ENST00000450940 LRP8Q14114 963 aa19.26■□□□□ 0.67
USP40-207ENST00000450940 GALNT3Q14435 633 aa19.26■□□□□ 0.67
USP40-207ENST00000450940 DOK6Q6PKX4 331 aa19.26■□□□□ 0.67
USP40-207ENST00000450940 B4GALNT4Q76KP1 1039 aa19.26■□□□□ 0.67
USP40-207ENST00000450940 LYSMD3Q7Z3D4 306 aa19.26■□□□□ 0.67
USP40-207ENST00000450940 TMC3Q7Z5M5 1100 aa19.26■□□□□ 0.67
USP40-207ENST00000450940 CLEC14AQ86T13 490 aa19.26■□□□□ 0.67
USP40-207ENST00000450940 TRIM74Q86UV6 250 aa19.26■□□□□ 0.67
USP40-207ENST00000450940 SPACA3Q8IXA5 215 aa19.26■□□□□ 0.67
USP40-207ENST00000450940 NAGSQ8N159 534 aa19.26■□□□□ 0.67
USP40-207ENST00000450940 ARL14Q8N4G2 192 aa19.26■□□□□ 0.67
USP40-207ENST00000450940 TFB1MQ8WVM0 346 aaKnown RBP19.26■□□□□ 0.67
USP40-207ENST00000450940 TMEM74Q96NL1 305 aa19.26■□□□□ 0.67
USP40-207ENST00000450940 PRORYQ9H606 182 aa19.26■□□□□ 0.67
USP40-207ENST00000450940 SUDS3Q9H7L9 328 aaPredicted RBP19.26■□□□□ 0.67
USP40-207ENST00000450940 ZFYVE1Q9HBF4 777 aa19.26■□□□□ 0.67
USP40-207ENST00000450940 SSUH2Q9Y2M2 353 aa19.26■□□□□ 0.67
USP40-207ENST00000450940 SBDSQ9Y3A5 250 aaKnown RBP eCLIP19.26■□□□□ 0.67
USP40-207ENST00000450940 PMS2P1A4D2B8 440 aa19.25■□□□□ 0.67
USP40-207ENST00000450940 RCCD1A6NED2 376 aa19.25■□□□□ 0.67
USP40-207ENST00000450940 BTNL10A8MVZ5 291 aa19.25■□□□□ 0.67
USP40-207ENST00000450940 FADS2P1A8MWK0 482 aa19.25■□□□□ 0.67
USP40-207ENST00000450940 INPP4BO15327 924 aa19.25■□□□□ 0.67
USP40-207ENST00000450940 B4GAT1O43505 415 aa19.25■□□□□ 0.67
USP40-207ENST00000450940 DNAJC6O75061 913 aa19.25■□□□□ 0.67
USP40-207ENST00000450940 ECEL1O95672 775 aa19.25■□□□□ 0.67
USP40-207ENST00000450940 MT-CYBP00156 380 aaPredicted RBP19.25■□□□□ 0.67
USP40-207ENST00000450940 RBMS1P29558 406 aaKnown RBP19.25■□□□□ 0.67
USP40-207ENST00000450940 CD68P34810 354 aaPredicted RBP19.25■□□□□ 0.67
USP40-207ENST00000450940 MARCKSL1P49006 195 aa19.25■□□□□ 0.67
USP40-207ENST00000450940 INHBCP55103 352 aa19.25■□□□□ 0.67
USP40-207ENST00000450940 MAZP56270 477 aaKnown RBP19.25■□□□□ 0.67
USP40-207ENST00000450940 DCDC1P59894 354 aa19.25■□□□□ 0.67
USP40-207ENST00000450940 PPP2R5EQ16537 467 aa19.25■□□□□ 0.67
USP40-207ENST00000450940 SLC30A9Q6PML9 568 aa19.25■□□□□ 0.67
USP40-207ENST00000450940 Q8N9G6 341 aaPredicted RBP19.25■□□□□ 0.67
USP40-207ENST00000450940 SPATA22Q8NHS9 363 aa19.25■□□□□ 0.67
USP40-207ENST00000450940 KRT35Q92764 455 aa19.25■□□□□ 0.67
USP40-207ENST00000450940 P3H4Q92791 437 aa19.25■□□□□ 0.67
USP40-207ENST00000450940 RBM41Q96IZ5 413 aaKnown RBP19.25■□□□□ 0.67
USP40-207ENST00000450940 SRPK1Q96SB4 655 aaKnown RBP19.25■□□□□ 0.67
USP40-207ENST00000450940 SYNDIG1Q9H7V2 258 aa19.25■□□□□ 0.67
USP40-207ENST00000450940 RMI1Q9H9A7 625 aa19.25■□□□□ 0.67
USP40-207ENST00000450940 PLEKHM1Q9Y4G2 1056 aa19.25■□□□□ 0.67
USP40-207ENST00000450940 OAS3Q9Y6K5 1087 aaKnown RBP19.25■□□□□ 0.67
USP40-207ENST00000450940 LOC400499M0QZD8 3231 aa19.25■□□□□ 0.67
USP40-207ENST00000450940 SOWAHDA6NJG2 315 aa19.24■□□□□ 0.67
USP40-207ENST00000450940 NDST3O95803 873 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms