RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 ADAMTSL4Q6UY14 1074 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 KANSL1Q7Z3B3 1105 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 GLT6D1Q7Z4J2 308 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 HID1Q8IV36 788 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 REXO1L1PQ8IX06 675 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 CBARPQ8N350 705 aaPredicted RBP12.95□□□□□ -0.34
CLK3-224ENST00000568605 SDR16C5Q8N3Y7 309 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 SLC25A41Q8N5S1 370 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 CCDC89Q8N998 374 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 FAM71DQ8N9W8 422 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 OR4C6Q8NH72 309 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 SCG3Q8WXD2 468 aaKnown RBP12.95□□□□□ -0.34
CLK3-224ENST00000568605 ATG4AQ8WYN0 398 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 PBKQ96KB5 322 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 CNDP2Q96KP4 475 aaKnown RBP12.95□□□□□ -0.34
CLK3-224ENST00000568605 TMEM121Q9BTD3 319 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 ZSCAN5AQ9BUG6 496 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 FICDQ9BVA6 458 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 TEX101Q9BY14 249 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 ABCG8Q9H221 673 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 USP29Q9HBJ7 922 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 DOLKQ9UPQ8 538 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 SHOC2Q9UQ13 582 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 DGKBQ9Y6T7 804 aa12.95□□□□□ -0.34
CLK3-224ENST00000568605 RP1P56715 2156 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 SPAARA0A1B0GVQ0 90 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 ERI2A8K979 691 aaKnown RBP12.94□□□□□ -0.34
CLK3-224ENST00000568605 K7ESM1 405 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 ENC1O14682 589 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 SCAMP1O15126 338 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 PSMD3O43242 534 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 TNFP01375 233 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 ANXA6P08133 673 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 ATXN1LP0C7T5 689 aaKnown RBP12.94□□□□□ -0.34
CLK3-224ENST00000568605 FTH1P19P0C7X4 201 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 PIRTP0C851 137 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 CDK4P11802 303 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 SRP54P61011 504 aaKnown RBP12.94□□□□□ -0.34
CLK3-224ENST00000568605 DAB2P98082 770 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 PDE1BQ01064 536 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 PTPRRQ15256 657 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 OASLQ15646 514 aaKnown RBP12.94□□□□□ -0.34
CLK3-224ENST00000568605 CCNG2Q16589 344 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 PARP6Q2NL67 630 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 ALG11Q2TAA5 492 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 HENMT1Q5T8I9 393 aaKnown RBP12.94□□□□□ -0.34
CLK3-224ENST00000568605 PDPK2PQ6A1A2 396 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 ZCCHC8Q6NZY4 707 aaKnown RBP12.94□□□□□ -0.34
CLK3-224ENST00000568605 KDM7AQ6ZMT4 941 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 GKN2Q86XP6 184 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 RBFAQ8N0V3 343 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 BLOC1S5Q8TDH9 187 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 LMX1AQ8TE12 382 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 GLMNQ92990 594 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 RTP4Q96DX8 246 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 PDXPQ96GD0 296 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 HIC2Q96JB3 615 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 PLEKHG4BQ96PX9 1271 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 SMIM14Q96QK8 99 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 TBL1YQ9BQ87 522 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 LRRC61Q9BV99 259 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 RIOK2Q9BVS4 552 aaKnown RBP12.94□□□□□ -0.34
CLK3-224ENST00000568605 FAM83DQ9H4H8 585 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 LRRC40Q9H9A6 602 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 TRMT1Q9NXH9 659 aaKnown RBP12.94□□□□□ -0.34
CLK3-224ENST00000568605 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.94□□□□□ -0.34
CLK3-224ENST00000568605 MOSPD1Q9UJG1 213 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 PKP3Q9Y446 797 aa12.94□□□□□ -0.34
CLK3-224ENST00000568605 GOLGA6L10A0A0M3HER8 536 aa12.93□□□□□ -0.34
CLK3-224ENST00000568605 PRSS38A1L453 326 aa12.93□□□□□ -0.34
CLK3-224ENST00000568605 TPP1O14773 563 aa12.93□□□□□ -0.34
CLK3-224ENST00000568605 PPFIA2O75334 1257 aa12.93□□□□□ -0.34
CLK3-224ENST00000568605 IFNB1P01574 187 aa12.93□□□□□ -0.34
CLK3-224ENST00000568605 CXCR5P32302 372 aa12.93□□□□□ -0.34
CLK3-224ENST00000568605 HMGCLP35914 325 aa12.93□□□□□ -0.34
CLK3-224ENST00000568605 FDFT1P37268 417 aa12.93□□□□□ -0.34
CLK3-224ENST00000568605 DUSP3P51452 185 aaPredicted RBP12.93□□□□□ -0.34
CLK3-224ENST00000568605 GDF10P55107 478 aa12.93□□□□□ -0.34
CLK3-224ENST00000568605 SNX1Q13596 522 aa12.93□□□□□ -0.34
CLK3-224ENST00000568605 PEX6Q13608 980 aa12.93□□□□□ -0.34
CLK3-224ENST00000568605 CDKN3Q16667 212 aa12.93□□□□□ -0.34
CLK3-224ENST00000568605 FAM182AQ5T1J6 154 aa12.93□□□□□ -0.34
CLK3-224ENST00000568605 N4BP2L1Q5TBK1 243 aaPredicted RBP12.93□□□□□ -0.34
CLK3-224ENST00000568605 DRICH1Q6PGQ1 229 aaPredicted RBP12.93□□□□□ -0.34
CLK3-224ENST00000568605 C4orf22Q6V702 233 aa12.93□□□□□ -0.34
CLK3-224ENST00000568605 RD3Q7Z3Z2 195 aa12.93□□□□□ -0.34
CLK3-224ENST00000568605 TMC3Q7Z5M5 1100 aa12.93□□□□□ -0.34
CLK3-224ENST00000568605 LINC00523Q86TU6 105 aa12.93□□□□□ -0.34
CLK3-224ENST00000568605 SLC35F6Q8N357 371 aa12.93□□□□□ -0.34
CLK3-224ENST00000568605 SLC25A45Q8N413 288 aa12.93□□□□□ -0.34
CLK3-224ENST00000568605 C1orf54Q8WWF1 131 aa12.93□□□□□ -0.34
CLK3-224ENST00000568605 SCAMP4Q969E2 229 aa12.93□□□□□ -0.34
CLK3-224ENST00000568605 TSACCQ96A04 125 aaPredicted RBP12.93□□□□□ -0.34
CLK3-224ENST00000568605 SPATA16Q9BXB7 569 aa12.93□□□□□ -0.34
CLK3-224ENST00000568605 FGF22Q9HCT0 170 aa12.93□□□□□ -0.34
CLK3-224ENST00000568605 UCKL1Q9NWZ5 548 aa12.93□□□□□ -0.34
CLK3-224ENST00000568605 PCDHGA1Q9Y5H4 931 aa12.93□□□□□ -0.34
CLK3-224ENST00000568605 A0A0U1RQS6 177 aa12.92□□□□□ -0.34
CLK3-224ENST00000568605 TMEM202A6NGA9 273 aa12.92□□□□□ -0.34
CLK3-224ENST00000568605 C2orf81A6NN90 581 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms