RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 USP29Q9HBJ7 922 aa17.26■□□□□ 0.35
SHKBP1-212ENST00000596163 APOBEC2Q9Y235 224 aaKnown RBP17.26■□□□□ 0.35
SHKBP1-212ENST00000596163 BTBD3Q9Y2F9 522 aa17.26■□□□□ 0.35
SHKBP1-212ENST00000596163 JRKLQ9Y4A0 524 aa17.26■□□□□ 0.35
SHKBP1-212ENST00000596163 OR1A2Q9Y585 309 aa17.26■□□□□ 0.35
SHKBP1-212ENST00000596163 CSNK1G3Q9Y6M4 447 aa17.26■□□□□ 0.35
SHKBP1-212ENST00000596163 KNL1Q8NG31 2342 aa17.26■□□□□ 0.35
SHKBP1-212ENST00000596163 SPAARA0A1B0GVQ0 90 aa17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 TNFRSF10CO14798 259 aa17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 KIF5CO60282 957 aa17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 RASGRP1O95267 797 aa17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 TRIM16O95361 564 aa17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 LDOC1O95751 146 aaPredicted RBP17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 TNFP01375 233 aa17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 C1SP09871 688 aa17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 HLA-DPA1P20036 260 aa17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 GPR1P46091 355 aa17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 TPRG1LQ5T0D9 272 aa17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 FAM182AQ5T1J6 154 aa17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 ARHGEF18Q6ZSZ5 1173 aa17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 KANSL1Q7Z3B3 1105 aa17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 REXO1L1PQ8IX06 675 aa17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 PHACTR4Q8IZ21 702 aa17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 IPMKQ8NFU5 416 aa17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 BAHD1Q8TBE0 780 aaPredicted RBP17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 FUBP1Q96AE4 644 aaKnown RBP17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 OXNAD1Q96HP4 312 aaPredicted RBP17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 SMIM14Q96QK8 99 aa17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 DUSP23Q9BVJ7 150 aa17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 TLR10Q9BXR5 811 aa17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 ABCG8Q9H221 673 aa17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 KCNF1Q9H3M0 494 aa17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 FAM83DQ9H4H8 585 aa17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 TRABDQ9H4I3 376 aa17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 EVA1BQ9NVM1 165 aa17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 HACD3Q9P035 362 aa17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 KLQ9UEF7 1012 aa17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 APOBEC3BQ9UH17 382 aaKnown RBP17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 ZKSCAN5Q9Y2L8 839 aa17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 ASCC3Q8N3C0 2202 aaKnown RBP17.25■□□□□ 0.35
SHKBP1-212ENST00000596163 TCRBV7S2A1N4TA0A589 114 aa17.24■□□□□ 0.35
SHKBP1-212ENST00000596163 SCAMP1O15126 338 aa17.24■□□□□ 0.35
SHKBP1-212ENST00000596163 AQP9O43315 295 aa17.24■□□□□ 0.35
SHKBP1-212ENST00000596163 GCATO75600 419 aa17.24■□□□□ 0.35
SHKBP1-212ENST00000596163 FGF1P05230 155 aa17.24■□□□□ 0.35
SHKBP1-212ENST00000596163 ADRB1P08588 477 aa17.24■□□□□ 0.35
SHKBP1-212ENST00000596163 MYCLP1P12525 358 aaPredicted RBP17.24■□□□□ 0.35
SHKBP1-212ENST00000596163 CTSEP14091 401 aa17.24■□□□□ 0.35
SHKBP1-212ENST00000596163 ACTN2P35609 894 aa17.24■□□□□ 0.35
SHKBP1-212ENST00000596163 SPINT3P49223 89 aa17.24■□□□□ 0.35
SHKBP1-212ENST00000596163 SRP54P61011 504 aaKnown RBP17.24■□□□□ 0.35
SHKBP1-212ENST00000596163 CDKN3Q16667 212 aa17.24■□□□□ 0.35
SHKBP1-212ENST00000596163 PARP6Q2NL67 630 aa17.24■□□□□ 0.35
SHKBP1-212ENST00000596163 KDM7AQ6ZMT4 941 aa17.24■□□□□ 0.35
SHKBP1-212ENST00000596163 HID1Q8IV36 788 aa17.24■□□□□ 0.35
SHKBP1-212ENST00000596163 SDR16C5Q8N3Y7 309 aa17.24■□□□□ 0.35
SHKBP1-212ENST00000596163 SLC25A45Q8N413 288 aa17.24■□□□□ 0.35
SHKBP1-212ENST00000596163 FSTL5Q8N475 847 aaPredicted RBP17.24■□□□□ 0.35
SHKBP1-212ENST00000596163 FAM71DQ8N9W8 422 aa17.24■□□□□ 0.35
SHKBP1-212ENST00000596163 OR56A4Q8NGH8 313 aa17.24■□□□□ 0.35
SHKBP1-212ENST00000596163 CCDC110Q8TBZ0 833 aa17.24■□□□□ 0.35
SHKBP1-212ENST00000596163 CNDP2Q96KP4 475 aaKnown RBP17.24■□□□□ 0.35
SHKBP1-212ENST00000596163 MRGPRX2Q96LB1 330 aa17.24■□□□□ 0.35
SHKBP1-212ENST00000596163 TEX101Q9BY14 249 aa17.24■□□□□ 0.35
SHKBP1-212ENST00000596163 HOMER3Q9NSC5 361 aa17.24■□□□□ 0.35
SHKBP1-212ENST00000596163 NLGN3Q9NZ94 848 aa17.24■□□□□ 0.35
SHKBP1-212ENST00000596163 CD84Q9UIB8 345 aa17.24■□□□□ 0.35
SHKBP1-212ENST00000596163 ZNF148Q9UQR1 794 aa17.24■□□□□ 0.35
SHKBP1-212ENST00000596163 R3HDM2Q9Y2K5 976 aaKnown RBP17.24■□□□□ 0.35
SHKBP1-212ENST00000596163 LAMA1P25391 3075 aa17.24■□□□□ 0.35
SHKBP1-212ENST00000596163 ANKRD36A6QL64 1941 aa17.23■□□□□ 0.35
SHKBP1-212ENST00000596163 F5H423 210 aaPredicted RBP17.23■□□□□ 0.35
SHKBP1-212ENST00000596163 PSMD3O43242 534 aa17.23■□□□□ 0.35
SHKBP1-212ENST00000596163 LIASO43766 372 aa17.23■□□□□ 0.35
SHKBP1-212ENST00000596163 CEP104O60308 925 aa17.23■□□□□ 0.35
SHKBP1-212ENST00000596163 HK3P52790 923 aa17.23■□□□□ 0.35
SHKBP1-212ENST00000596163 ELOCQ15369 112 aa17.23■□□□□ 0.35
SHKBP1-212ENST00000596163 SLC1A5Q15758 541 aa17.23■□□□□ 0.35
SHKBP1-212ENST00000596163 P3H1Q32P28 736 aa17.23■□□□□ 0.35
SHKBP1-212ENST00000596163 ZNF569Q5MCW4 686 aa17.23■□□□□ 0.35
SHKBP1-212ENST00000596163 ADAMTSL4Q6UY14 1074 aa17.23■□□□□ 0.35
SHKBP1-212ENST00000596163 LYSMD3Q7Z3D4 306 aa17.23■□□□□ 0.35
SHKBP1-212ENST00000596163 RD3Q7Z3Z2 195 aa17.23■□□□□ 0.35
SHKBP1-212ENST00000596163 TMC3Q7Z5M5 1100 aa17.23■□□□□ 0.35
SHKBP1-212ENST00000596163 SLC25A41Q8N5S1 370 aa17.23■□□□□ 0.35
SHKBP1-212ENST00000596163 ZNF548Q8NEK5 533 aaPredicted RBP17.23■□□□□ 0.35
SHKBP1-212ENST00000596163 OR4C6Q8NH72 309 aa17.23■□□□□ 0.35
SHKBP1-212ENST00000596163 LMX1AQ8TE12 382 aa17.23■□□□□ 0.35
SHKBP1-212ENST00000596163 SCG3Q8WXD2 468 aaKnown RBP17.23■□□□□ 0.35
SHKBP1-212ENST00000596163 PBKQ96KB5 322 aa17.23■□□□□ 0.35
SHKBP1-212ENST00000596163 TMEM121Q9BTD3 319 aa17.23■□□□□ 0.35
SHKBP1-212ENST00000596163 RIOK2Q9BVS4 552 aaKnown RBP17.23■□□□□ 0.35
SHKBP1-212ENST00000596163 UCKL1Q9NWZ5 548 aa17.23■□□□□ 0.35
SHKBP1-212ENST00000596163 SHOC2Q9UQ13 582 aa17.23■□□□□ 0.35
SHKBP1-212ENST00000596163 ZNF711Q9Y462 761 aa17.23■□□□□ 0.35
SHKBP1-212ENST00000596163 DGKBQ9Y6T7 804 aa17.23■□□□□ 0.35
SHKBP1-212ENST00000596163 DOCK9Q9BZ29 2069 aa17.22■□□□□ 0.35
SHKBP1-212ENST00000596163 A0A0U1RQS6 177 aa17.22■□□□□ 0.35
SHKBP1-212ENST00000596163 K7ESM1 405 aa17.22■□□□□ 0.35
SHKBP1-212ENST00000596163 ENC1O14682 589 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms