RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 C4orf33Q8N1A6 199 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 C2CD4AQ8NCU7 369 aaPredicted RBP18.63■□□□□ 0.57
CLN3-206ENST00000360019 DNASE1L2Q92874 299 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 SERAC1Q96JX3 654 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 ZFYVE1Q9HBF4 777 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 BPIFA1Q9NP55 256 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 NSMCE4AQ9NXX6 385 aa18.63■□□□□ 0.57
CLN3-206ENST00000360019 MARCH4Q9P2E8 410 aaPredicted RBP18.63■□□□□ 0.57
CLN3-206ENST00000360019 A8MX80 341 aa18.62■□□□□ 0.57
CLN3-206ENST00000360019 STX7O15400 261 aaKnown RBP18.62■□□□□ 0.57
CLN3-206ENST00000360019 CLDN7O95471 211 aa18.62■□□□□ 0.57
CLN3-206ENST00000360019 AHSGP02765 367 aa18.62■□□□□ 0.57
CLN3-206ENST00000360019 EPHX1P07099 455 aa18.62■□□□□ 0.57
CLN3-206ENST00000360019 ITGA2BP08514 1039 aa18.62■□□□□ 0.57
CLN3-206ENST00000360019 CHRM1P11229 460 aaPredicted RBP18.62■□□□□ 0.57
CLN3-206ENST00000360019 KRT4P19013 534 aa18.62■□□□□ 0.57
CLN3-206ENST00000360019 CNTFP26441 200 aa18.62■□□□□ 0.57
CLN3-206ENST00000360019 LIMK2P53671 638 aa18.62■□□□□ 0.57
CLN3-206ENST00000360019 CSE1LP55060 971 aaKnown RBP18.62■□□□□ 0.57
CLN3-206ENST00000360019 ENPP2Q13822 863 aa18.62■□□□□ 0.57
CLN3-206ENST00000360019 UGP2Q16851 508 aa18.62■□□□□ 0.57
CLN3-206ENST00000360019 POM121L1PQ3SYA9 428 aa18.62■□□□□ 0.57
CLN3-206ENST00000360019 ZNF805Q5CZA5 627 aa18.62■□□□□ 0.57
CLN3-206ENST00000360019 CRTC1Q6UUV9 634 aa18.62■□□□□ 0.57
CLN3-206ENST00000360019 USP45Q70EL2 814 aa18.62■□□□□ 0.57
CLN3-206ENST00000360019 RALGPS2Q86X27 583 aaPredicted RBP18.62■□□□□ 0.57
CLN3-206ENST00000360019 OR8D1Q8WZ84 308 aa18.62■□□□□ 0.57
CLN3-206ENST00000360019 MTBPQ96DY7 904 aa18.62■□□□□ 0.57
CLN3-206ENST00000360019 FAM129BQ96TA1 746 aa18.62■□□□□ 0.57
CLN3-206ENST00000360019 KLF6Q99612 283 aaPredicted RBP18.62■□□□□ 0.57
CLN3-206ENST00000360019 SENP1Q9P0U3 644 aa18.62■□□□□ 0.57
CLN3-206ENST00000360019 FKBPLQ9UIM3 349 aa18.62■□□□□ 0.57
CLN3-206ENST00000360019 PPM1HQ9ULR3 514 aa18.62■□□□□ 0.57
CLN3-206ENST00000360019 BRAFP15056 766 aa18.61■□□□□ 0.57
CLN3-206ENST00000360019 IL9P15248 144 aa18.61■□□□□ 0.57
CLN3-206ENST00000360019 LHCGRP22888 699 aa18.61■□□□□ 0.57
CLN3-206ENST00000360019 METAP1P53582 386 aa18.61■□□□□ 0.57
CLN3-206ENST00000360019 SEC13P55735 322 aa18.61■□□□□ 0.57
CLN3-206ENST00000360019 POLR2LP62875 67 aaKnown RBP18.61■□□□□ 0.57
CLN3-206ENST00000360019 PON2Q15165 354 aa18.61■□□□□ 0.57
CLN3-206ENST00000360019 TPRG1Q6ZUI0 275 aa18.61■□□□□ 0.57
CLN3-206ENST00000360019 SH2D5Q6ZV89 423 aa18.61■□□□□ 0.57
CLN3-206ENST00000360019 CILP2Q8IUL8 1156 aa18.61■□□□□ 0.57
CLN3-206ENST00000360019 CHPFQ8IZ52 775 aa18.61■□□□□ 0.57
CLN3-206ENST00000360019 NDUFAF2Q8N183 169 aa18.61■□□□□ 0.57
CLN3-206ENST00000360019 ZNF513Q8N8E2 541 aaPredicted RBP18.61■□□□□ 0.57
CLN3-206ENST00000360019 OR4L1Q8NH43 312 aa18.61■□□□□ 0.57
CLN3-206ENST00000360019 CALML6Q8TD86 181 aa18.61■□□□□ 0.57
CLN3-206ENST00000360019 ATXN7L3BQ96GX2 97 aa18.61■□□□□ 0.57
CLN3-206ENST00000360019 SRPK1Q96SB4 655 aaKnown RBP18.61■□□□□ 0.57
CLN3-206ENST00000360019 PRSS16Q9NQE7 514 aa18.61■□□□□ 0.57
CLN3-206ENST00000360019 DKK3Q9UBP4 350 aa18.61■□□□□ 0.57
CLN3-206ENST00000360019 FBXO5Q9UKT4 447 aa18.61■□□□□ 0.57
CLN3-206ENST00000360019 STON1Q9Y6Q2 735 aa18.61■□□□□ 0.57
CLN3-206ENST00000360019 VCANP13611 3396 aa18.61■□□□□ 0.57
CLN3-206ENST00000360019 C16orf96A6NNT2 1141 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 GOLGA8RI6L899 631 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 RFPL1O75677 317 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 MT-ND3P03897 115 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 PRNPP04156 253 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 TIMP2P16035 220 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 SPRP35270 261 aaPredicted RBP18.6■□□□□ 0.57
CLN3-206ENST00000360019 WASP42768 502 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 TFF2Q03403 129 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 HABP4Q5JVS0 413 aaKnown RBP18.6■□□□□ 0.57
CLN3-206ENST00000360019 LRRC66Q68CR7 880 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 LDB1Q86U70 411 aaPredicted RBP18.6■□□□□ 0.57
CLN3-206ENST00000360019 ZC3HC1Q86WB0 502 aaKnown RBP18.6■□□□□ 0.57
CLN3-206ENST00000360019 TMIEQ8NEW7 156 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 ERLEC1Q96DZ1 483 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 SMC6Q96SB8 1091 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 SELENOSQ9BQE4 189 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 C8orf33Q9H7E9 229 aaPredicted RBP18.6■□□□□ 0.57
CLN3-206ENST00000360019 B4GALT6Q9UBX8 382 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 UPK3BL1B0FP48 263 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 UPK3BL2E5RIL1 263 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 H7C0S8 307 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 KPNA3O00505 521 aaPredicted RBP18.6■□□□□ 0.57
CLN3-206ENST00000360019 EGFP01133 1207 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 ALDOAP04075 364 aaKnown RBP18.6■□□□□ 0.57
CLN3-206ENST00000360019 PRSS56P0CW18 603 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 TIE1P35590 1138 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 HADHAP40939 763 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 PEX6Q13608 980 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 MPP2Q14168 576 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 SEMA3AQ14563 771 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 ZNF789Q5FWF6 425 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 TMEM196Q5HYL7 178 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 FSTL4Q6MZW2 842 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 AFTPHQ6ULP2 937 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 TIFABQ6ZNK6 161 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 KIAA0408Q6ZU52 694 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 PARS2Q7L3T8 475 aaKnown RBP18.6■□□□□ 0.57
CLN3-206ENST00000360019 LMNTD2Q8IXW0 634 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 OTUD6BQ8N6M0 293 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 ACVR1CQ8NER5 493 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 PIP4K2CQ8TBX8 421 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 MDM1Q8TC05 714 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 HCAR2Q8TDS4 363 aa18.6■□□□□ 0.57
CLN3-206ENST00000360019 VPS39Q96JC1 886 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms