RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 CILP2Q8IUL8 1156 aa16.92■□□□□ 0.3
LDLR-206ENST00000557958 CMTM8Q8IZV2 173 aa16.92■□□□□ 0.3
LDLR-206ENST00000557958 FITM2Q8N6M3 262 aa16.92■□□□□ 0.3
LDLR-206ENST00000557958 GPATCH11Q8N954 259 aa16.92■□□□□ 0.3
LDLR-206ENST00000557958 ITFG1Q8TB96 612 aa16.92■□□□□ 0.3
LDLR-206ENST00000557958 HDAC10Q969S8 669 aa16.92■□□□□ 0.3
LDLR-206ENST00000557958 ACDQ96AP0 544 aa16.92■□□□□ 0.3
LDLR-206ENST00000557958 CDCA3Q99618 268 aaPredicted RBP16.92■□□□□ 0.3
LDLR-206ENST00000557958 FAM96AQ9H5X1 160 aa16.92■□□□□ 0.3
LDLR-206ENST00000557958 SFXN1Q9H9B4 322 aa16.92■□□□□ 0.3
LDLR-206ENST00000557958 CDH22Q9UJ99 828 aa16.92■□□□□ 0.3
LDLR-206ENST00000557958 DCTN4Q9UJW0 460 aa16.92■□□□□ 0.3
LDLR-206ENST00000557958 CORO1CQ9ULV4 474 aaPredicted RBP16.92■□□□□ 0.3
LDLR-206ENST00000557958 CCL26Q9Y258 94 aa16.92■□□□□ 0.3
LDLR-206ENST00000557958 SOBPA7XYQ1 873 aa16.91■□□□□ 0.3
LDLR-206ENST00000557958 ZNF197O14709 1029 aa16.91■□□□□ 0.3
LDLR-206ENST00000557958 ZMPSTE24O75844 475 aa16.91■□□□□ 0.3
LDLR-206ENST00000557958 ATP5HO75947 161 aa16.91■□□□□ 0.3
LDLR-206ENST00000557958 GLP2RO95838 553 aa16.91■□□□□ 0.3
LDLR-206ENST00000557958 CEBPBP17676 345 aa16.91■□□□□ 0.3
LDLR-206ENST00000557958 CSRP3P50461 194 aa16.91■□□□□ 0.3
LDLR-206ENST00000557958 PRKAA2P54646 552 aa16.91■□□□□ 0.3
LDLR-206ENST00000557958 EPHA5P54756 1037 aa16.91■□□□□ 0.3
LDLR-206ENST00000557958 RHOAP61586 193 aa16.91■□□□□ 0.3
LDLR-206ENST00000557958 DLG2Q15700 870 aa16.91■□□□□ 0.3
LDLR-206ENST00000557958 GALNTL6Q49A17 601 aa16.91■□□□□ 0.3
LDLR-206ENST00000557958 SCG3Q8WXD2 468 aaKnown RBP16.91■□□□□ 0.3
LDLR-206ENST00000557958 EXOC2Q96KP1 924 aa16.91■□□□□ 0.3
LDLR-206ENST00000557958 ZSWIM3Q96MP5 696 aa16.91■□□□□ 0.3
LDLR-206ENST00000557958 TASP1Q9H6P5 420 aa16.91■□□□□ 0.3
LDLR-206ENST00000557958 TXLNGQ9NUQ3 528 aa16.91■□□□□ 0.3
LDLR-206ENST00000557958 KCNK4Q9NYG8 393 aa16.91■□□□□ 0.3
LDLR-206ENST00000557958 VPS51Q9UID3 782 aa16.91■□□□□ 0.3
LDLR-206ENST00000557958 ZMYM5Q9UJ78 669 aa16.91■□□□□ 0.3
LDLR-206ENST00000557958 CHKBQ9Y259 395 aa16.91■□□□□ 0.3
LDLR-206ENST00000557958 ACTL7AQ9Y615 435 aa16.91■□□□□ 0.3
LDLR-206ENST00000557958 CAPN7Q9Y6W3 813 aa16.91■□□□□ 0.3
LDLR-206ENST00000557958 OBSL1O75147 1896 aa16.91■□□□□ 0.3
LDLR-206ENST00000557958 CXorf51AA0A1B0GTR3 108 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 E2F8A0AVK6 867 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 C2orf81A6NN90 581 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 LEFTY2O00292 366 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 SNAP91O60641 907 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 GJB3O75712 270 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 DNAJC8O75937 253 aaPredicted RBP16.9■□□□□ 0.3
LDLR-206ENST00000557958 ATP5BP06576 529 aaKnown RBP16.9■□□□□ 0.3
LDLR-206ENST00000557958 SLC35E2BP0CK96 405 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 RALBP11234 206 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 KCNA4P22459 653 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 MZF1P28698 734 aaPredicted RBP16.9■□□□□ 0.3
LDLR-206ENST00000557958 CSKP41240 450 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 SKIV2L2P42285 1042 aaKnown RBP16.9■□□□□ 0.3
LDLR-206ENST00000557958 MAPK8P45983 427 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 RGRP47804 291 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 AP1S1P61966 158 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 BNIP1Q12981 228 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 TAF1AQ15573 450 aaPredicted RBP16.9■□□□□ 0.3
LDLR-206ENST00000557958 FSCBQ5H9T9 825 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 SWT1Q5T5J6 900 aaKnown RBP16.9■□□□□ 0.3
LDLR-206ENST00000557958 GLT6D1Q7Z4J2 308 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 PTAR1Q7Z6K3 402 aaPredicted RBP16.9■□□□□ 0.3
LDLR-206ENST00000557958 SDCCAG8Q86SQ7 713 aaPredicted RBP16.9■□□□□ 0.3
LDLR-206ENST00000557958 SLC41A1Q8IVJ1 513 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 SH3RF2Q8TEC5 729 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 ERP27Q96DN0 273 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 FAM161BQ96MY7 647 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.9■□□□□ 0.3
LDLR-206ENST00000557958 KIAA1522Q9P206 1035 aaPredicted RBP16.9■□□□□ 0.3
LDLR-206ENST00000557958 OR51B4Q9Y5P0 310 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 RAI2Q9Y5P3 530 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 DOCK6Q96HP0 2047 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 HAUS5O94927 633 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 GSRP00390 522 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 DLDP09622 509 aaKnown RBP16.9■□□□□ 0.3
LDLR-206ENST00000557958 MYL2P10916 166 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 FGF3P11487 239 aaPredicted RBP16.9■□□□□ 0.3
LDLR-206ENST00000557958 IGFBP4P22692 258 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 RGS19P49795 217 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 IRF9Q00978 393 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 ASPHQ12797 758 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 PRSS36Q5K4E3 855 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 LINGO4Q6UY18 593 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 TBC1D1Q86TI0 1168 aaPredicted RBP16.9■□□□□ 0.3
LDLR-206ENST00000557958 C10orf107Q8IVU9 208 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 WDR75Q8IWA0 830 aaKnown RBP16.9■□□□□ 0.3
LDLR-206ENST00000557958 BBS7Q8IWZ6 715 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 ZNF557Q8N988 423 aaPredicted RBP16.9■□□□□ 0.3
LDLR-206ENST00000557958 ST13P5Q8NFI4 369 aaPredicted RBP16.9■□□□□ 0.3
LDLR-206ENST00000557958 GPR150Q8NGU9 434 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 RFWD2Q8NHY2 731 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 TTC8Q8TAM2 541 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 WWP1Q9H0M0 922 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 FBXO6Q9NRD1 293 aaPredicted RBP16.9■□□□□ 0.3
LDLR-206ENST00000557958 HACD3Q9P035 362 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 COLQQ9Y215 455 aaPredicted RBP16.9■□□□□ 0.3
LDLR-206ENST00000557958 ARL5AQ9Y689 179 aa16.9■□□□□ 0.3
LDLR-206ENST00000557958 PHGDHO43175 533 aaKnown RBP16.89■□□□□ 0.29
LDLR-206ENST00000557958 F7P08709 466 aaPredicted RBP16.89■□□□□ 0.29
LDLR-206ENST00000557958 OGNP20774 298 aaKnown RBP16.89■□□□□ 0.29
LDLR-206ENST00000557958 HNRNPH1P31943 449 aaKnown RBP16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms