RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 NKD1Q969G9 470 aa17.02■□□□□ 0.32
VPS29-204ENST00000548259 KIAA1143Q96AT1 154 aaPredicted RBP17.02■□□□□ 0.32
VPS29-204ENST00000548259 RDH14Q9HBH5 336 aa17.02■□□□□ 0.32
VPS29-204ENST00000548259 RWDD2AQ9UIY3 292 aa17.02■□□□□ 0.32
VPS29-204ENST00000548259 MOSPD1Q9UJG1 213 aa17.02■□□□□ 0.32
VPS29-204ENST00000548259 ATP8A1Q9Y2Q0 1164 aa17.02■□□□□ 0.32
VPS29-204ENST00000548259 HOXC4P09017 264 aaPredicted RBP17.01■□□□□ 0.31
VPS29-204ENST00000548259 CSTF2P33240 577 aaKnown RBP eCLIP17.01■□□□□ 0.31
VPS29-204ENST00000548259 STAT1P42224 750 aa17.01■□□□□ 0.31
VPS29-204ENST00000548259 NCAPHQ15003 741 aa17.01■□□□□ 0.31
VPS29-204ENST00000548259 SKIDA1Q1XH10 827 aa17.01■□□□□ 0.31
VPS29-204ENST00000548259 PARP15Q460N3 678 aa17.01■□□□□ 0.31
VPS29-204ENST00000548259 EFHC2Q5JST6 749 aa17.01■□□□□ 0.31
VPS29-204ENST00000548259 STRADAQ7RTN6 431 aa17.01■□□□□ 0.31
VPS29-204ENST00000548259 FAM26EQ8N5C1 309 aa17.01■□□□□ 0.31
VPS29-204ENST00000548259 C9orf43Q8TAL5 461 aaPredicted RBP17.01■□□□□ 0.31
VPS29-204ENST00000548259 OR1E3Q8WZA6 343 aa17.01■□□□□ 0.31
VPS29-204ENST00000548259 TUBGCP5Q96RT8 1024 aa17.01■□□□□ 0.31
VPS29-204ENST00000548259 DPYSL5Q9BPU6 564 aa17.01■□□□□ 0.31
VPS29-204ENST00000548259 EFHD1Q9BUP0 239 aa17.01■□□□□ 0.31
VPS29-204ENST00000548259 CYP4F12Q9HCS2 524 aa17.01■□□□□ 0.31
VPS29-204ENST00000548259 METTL5Q9NRN9 209 aaKnown RBP17.01■□□□□ 0.31
VPS29-204ENST00000548259 TSPAN11A1L157 253 aa17■□□□□ 0.31
VPS29-204ENST00000548259 PNMA6AP0CW24 399 aaPredicted RBP17■□□□□ 0.31
VPS29-204ENST00000548259 CCL4P13236 92 aa17■□□□□ 0.31
VPS29-204ENST00000548259 EPHB2P29323 1055 aa17■□□□□ 0.31
VPS29-204ENST00000548259 MAN1A1P33908 653 aa17■□□□□ 0.31
VPS29-204ENST00000548259 MMP12P39900 470 aa17■□□□□ 0.31
VPS29-204ENST00000548259 NOP2P46087 812 aaKnown RBP17■□□□□ 0.31
VPS29-204ENST00000548259 GPR3P46089 330 aa17■□□□□ 0.31
VPS29-204ENST00000548259 POLR2LP62875 67 aaKnown RBP17■□□□□ 0.31
VPS29-204ENST00000548259 B4GALNT1Q00973 533 aa17■□□□□ 0.31
VPS29-204ENST00000548259 ILF3Q12906 894 aaKnown RBP eCLIP17■□□□□ 0.31
VPS29-204ENST00000548259 TPD52L1Q16890 204 aaPredicted RBP17■□□□□ 0.31
VPS29-204ENST00000548259 TAF3Q5VWG9 929 aa17■□□□□ 0.31
VPS29-204ENST00000548259 CACNA2D3Q8IZS8 1091 aa17■□□□□ 0.31
VPS29-204ENST00000548259 EMC1Q8N766 993 aa17■□□□□ 0.31
VPS29-204ENST00000548259 VOPP1Q96AW1 172 aa17■□□□□ 0.31
VPS29-204ENST00000548259 DDA1Q9BW61 102 aa17■□□□□ 0.31
VPS29-204ENST00000548259 GSDMCQ9BYG8 508 aa17■□□□□ 0.31
VPS29-204ENST00000548259 TMEM168Q9H0V1 697 aa17■□□□□ 0.31
VPS29-204ENST00000548259 WDR26Q9H7D7 661 aa17■□□□□ 0.31
VPS29-204ENST00000548259 ATP13A3Q9H7F0 1226 aa17■□□□□ 0.31
VPS29-204ENST00000548259 CATSPERBQ9H7T0 1116 aa17■□□□□ 0.31
VPS29-204ENST00000548259 FGF22Q9HCT0 170 aa17■□□□□ 0.31
VPS29-204ENST00000548259 UBA2Q9UBT2 640 aaPredicted RBP17■□□□□ 0.31
VPS29-204ENST00000548259 TMEM202A6NGA9 273 aa16.99■□□□□ 0.31
VPS29-204ENST00000548259 RECQL5O94762 991 aaPredicted RBP16.99■□□□□ 0.31
VPS29-204ENST00000548259 PIGNO95427 931 aa16.99■□□□□ 0.31
VPS29-204ENST00000548259 ELFN1P0C7U0 828 aa16.99■□□□□ 0.31
VPS29-204ENST00000548259 SERPINA4P29622 427 aa16.99■□□□□ 0.31
VPS29-204ENST00000548259 OR1D5P58170 312 aa16.99■□□□□ 0.31
VPS29-204ENST00000548259 RAB15P59190 212 aa16.99■□□□□ 0.31
VPS29-204ENST00000548259 SEPT6Q14141 434 aa16.99■□□□□ 0.31
VPS29-204ENST00000548259 C2CD6Q53TS8 623 aa16.99■□□□□ 0.31
VPS29-204ENST00000548259 DCAF12Q5T6F0 453 aa16.99■□□□□ 0.31
VPS29-204ENST00000548259 NAA35Q5VZE5 725 aa16.99■□□□□ 0.31
VPS29-204ENST00000548259 TRNP1Q6NT89 227 aa16.99■□□□□ 0.31
VPS29-204ENST00000548259 TMPRSS9Q7Z410 1059 aa16.99■□□□□ 0.31
VPS29-204ENST00000548259 FAM114A1Q8IWE2 563 aa16.99■□□□□ 0.31
VPS29-204ENST00000548259 RTL3Q8N8U3 475 aaKnown RBP16.99■□□□□ 0.31
VPS29-204ENST00000548259 RXFP2Q8WXD0 754 aa16.99■□□□□ 0.31
VPS29-204ENST00000548259 CPA5Q8WXQ8 436 aa16.99■□□□□ 0.31
VPS29-204ENST00000548259 FUBP1Q96AE4 644 aaKnown RBP16.99■□□□□ 0.31
VPS29-204ENST00000548259 ZMYND15Q9H091 742 aa16.99■□□□□ 0.31
VPS29-204ENST00000548259 SIX2Q9NPC8 291 aa16.99■□□□□ 0.31
VPS29-204ENST00000548259 KCTD5Q9NXV2 234 aa16.99■□□□□ 0.31
VPS29-204ENST00000548259 IGHV5-10-1A0A0J9YXX1 117 aa16.98■□□□□ 0.31
VPS29-204ENST00000548259 FAM72CH0Y354 149 aa16.98■□□□□ 0.31
VPS29-204ENST00000548259 INSIG1O15503 277 aa16.98■□□□□ 0.31
VPS29-204ENST00000548259 B4GAT1O43505 415 aa16.98■□□□□ 0.31
VPS29-204ENST00000548259 LIFP15018 202 aa16.98■□□□□ 0.31
VPS29-204ENST00000548259 UGT1A3P35503 534 aa16.98■□□□□ 0.31
VPS29-204ENST00000548259 PTPN9P43378 593 aa16.98■□□□□ 0.31
VPS29-204ENST00000548259 LIMK2P53671 638 aa16.98■□□□□ 0.31
VPS29-204ENST00000548259 MAN2A1Q16706 1144 aa16.98■□□□□ 0.31
VPS29-204ENST00000548259 C15orf59Q2T9L4 293 aaPredicted RBP16.98■□□□□ 0.31
VPS29-204ENST00000548259 CCDC14Q49A88 953 aa16.98■□□□□ 0.31
VPS29-204ENST00000548259 C4orf17Q53FE4 359 aa16.98■□□□□ 0.31
VPS29-204ENST00000548259 FAM72AQ5TYM5 149 aa16.98■□□□□ 0.31
VPS29-204ENST00000548259 FAM72DQ6L9T8 149 aa16.98■□□□□ 0.31
VPS29-204ENST00000548259 SLFN11Q7Z7L1 901 aa16.98■□□□□ 0.31
VPS29-204ENST00000548259 ATCAYQ86WG3 371 aa16.98■□□□□ 0.31
VPS29-204ENST00000548259 FAM72BQ86X60 149 aa16.98■□□□□ 0.31
VPS29-204ENST00000548259 RCBTB1Q8NDN9 531 aa16.98■□□□□ 0.31
VPS29-204ENST00000548259 OR4D9Q8NGE8 314 aa16.98■□□□□ 0.31
VPS29-204ENST00000548259 ZDHHC1Q8WTX9 485 aa16.98■□□□□ 0.31
VPS29-204ENST00000548259 ART4Q93070 314 aa16.98■□□□□ 0.31
VPS29-204ENST00000548259 NTAN1Q96AB6 310 aa16.98■□□□□ 0.31
VPS29-204ENST00000548259 EXOC2Q96KP1 924 aa16.98■□□□□ 0.31
VPS29-204ENST00000548259 CCDC74BQ96LY2 380 aa16.98■□□□□ 0.31
VPS29-204ENST00000548259 TEFMQ96QE5 360 aaKnown RBP16.98■□□□□ 0.31
VPS29-204ENST00000548259 NUDT22Q9BRQ3 303 aa16.98■□□□□ 0.31
VPS29-204ENST00000548259 MRPL40Q9NQ50 206 aaKnown RBP16.98■□□□□ 0.31
VPS29-204ENST00000548259 SLC39A1Q9NY26 324 aa16.98■□□□□ 0.31
VPS29-204ENST00000548259 AJAP1Q9UKB5 411 aaPredicted RBP16.98■□□□□ 0.31
VPS29-204ENST00000548259 MAN2B2Q9Y2E5 1009 aa16.98■□□□□ 0.31
VPS29-204ENST00000548259 TEX15Q9BXT5 2789 aa16.98■□□□□ 0.31
VPS29-204ENST00000548259 PRSS38A1L453 326 aa16.97■□□□□ 0.31
VPS29-204ENST00000548259 RASA4BC9J798 803 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 102.5 ms