RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ERFEQ4G0M1 354 aa7.66□□□□□ -1.18
NUP54-208ENST00000508604 ZBTB33Q86T24 672 aa7.66□□□□□ -1.18
NUP54-208ENST00000508604 TTLL8A6PVC2 850 aa7.65□□□□□ -1.18
NUP54-208ENST00000508604 CTDSPL2Q05D32 466 aa7.65□□□□□ -1.18
NUP54-208ENST00000508604 DHX9Q08211 1270 aaKnown RBP7.65□□□□□ -1.18
NUP54-208ENST00000508604 DNMT3LQ9UJW3 386 aa7.65□□□□□ -1.18
NUP54-208ENST00000508604 PNMA1Q8ND90 353 aa7.64□□□□□ -1.19
NUP54-208ENST00000508604 PPP1R26Q5T8A7 1209 aaPredicted RBP7.63□□□□□ -1.19
NUP54-208ENST00000508604 FKBPLQ9UIM3 349 aa7.63□□□□□ -1.19
NUP54-208ENST00000508604 ZC3H4Q9UPT8 1303 aaKnown RBP7.63□□□□□ -1.19
NUP54-208ENST00000508604 KCTD15Q96SI1 283 aaPredicted RBP7.63□□□□□ -1.19
NUP54-208ENST00000508604 PTK2Q05397 1052 aa7.62□□□□□ -1.19
NUP54-208ENST00000508604 FIGNL2A6NMB9 653 aa7.61□□□□□ -1.19
NUP54-208ENST00000508604 SKIV2LQ15477 1246 aaKnown RBP7.61□□□□□ -1.19
NUP54-208ENST00000508604 PTSQ03393 145 aa7.6□□□□□ -1.19
NUP54-208ENST00000508604 Q6ZVU0 165 aa7.6□□□□□ -1.19
NUP54-208ENST00000508604 LRRN4Q8WUT4 740 aa7.6□□□□□ -1.19
NUP54-208ENST00000508604 SPINT1O43278 529 aa7.6□□□□□ -1.19
NUP54-208ENST00000508604 CBLBQ13191 982 aa7.6□□□□□ -1.19
NUP54-208ENST00000508604 TRIM52Q96A61 297 aa7.6□□□□□ -1.19
NUP54-208ENST00000508604 NR6A1Q15406 480 aa7.59□□□□□ -1.19
NUP54-208ENST00000508604 NBPF20Q3BBV1 942 aa7.59□□□□□ -1.19
NUP54-208ENST00000508604 DDRGK1Q96HY6 314 aa7.59□□□□□ -1.19
NUP54-208ENST00000508604 GPSM3Q9Y4H4 160 aa7.59□□□□□ -1.19
NUP54-208ENST00000508604 SH3D19Q5HYK7 790 aa7.58□□□□□ -1.2
NUP54-208ENST00000508604 AP1G2O75843 785 aa7.57□□□□□ -1.2
NUP54-208ENST00000508604 CCDC155Q8N6L0 562 aa7.57□□□□□ -1.2
NUP54-208ENST00000508604 CNTNAP3BQ96NU0 1288 aa7.57□□□□□ -1.2
NUP54-208ENST00000508604 CNTNAP3Q9BZ76 1288 aa7.57□□□□□ -1.2
NUP54-208ENST00000508604 RNF225M0QZC1 329 aaPredicted RBP7.57□□□□□ -1.2
NUP54-208ENST00000508604 POLMQ9NP87 494 aaPredicted RBP7.57□□□□□ -1.2
NUP54-208ENST00000508604 RELBQ01201 579 aa7.56□□□□□ -1.2
NUP54-208ENST00000508604 INTS6LQ5JSJ4 861 aaKnown RBP7.56□□□□□ -1.2
NUP54-208ENST00000508604 PPP2R2DQ66LE6 453 aa7.56□□□□□ -1.2
NUP54-208ENST00000508604 NANOS1Q8WY41 292 aaKnown RBP7.56□□□□□ -1.2
NUP54-208ENST00000508604 DZIP3Q86Y13 1208 aaKnown RBP7.55□□□□□ -1.2
NUP54-208ENST00000508604 ADAM32Q8TC27 787 aa7.55□□□□□ -1.2
NUP54-208ENST00000508604 KCNMA1Q12791 1236 aa7.54□□□□□ -1.2
NUP54-208ENST00000508604 SV2AQ7L0J3 742 aa7.54□□□□□ -1.2
NUP54-208ENST00000508604 PROCA1Q8NCQ7 364 aaPredicted RBP7.54□□□□□ -1.2
NUP54-208ENST00000508604 AGBL1Q96MI9 1066 aa7.54□□□□□ -1.2
NUP54-208ENST00000508604 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.54□□□□□ -1.2
NUP54-208ENST00000508604 COL25A1Q9BXS0 654 aaPredicted RBP7.54□□□□□ -1.2
NUP54-208ENST00000508604 KDM4CQ9H3R0 1056 aa7.54□□□□□ -1.2
NUP54-208ENST00000508604 CDC14CA4D256 554 aa7.54□□□□□ -1.2
NUP54-208ENST00000508604 SLC35F4A4IF30 521 aa7.54□□□□□ -1.2
NUP54-208ENST00000508604 RAB15P59190 212 aa7.54□□□□□ -1.2
NUP54-208ENST00000508604 GPR161Q8N6U8 529 aaKnown RBP7.54□□□□□ -1.2
NUP54-208ENST00000508604 ITGA6P23229 1130 aa7.53□□□□□ -1.2
NUP54-208ENST00000508604 INSM2Q96T92 566 aaPredicted RBP7.53□□□□□ -1.2
NUP54-208ENST00000508604 CTSOP43234 321 aaPredicted RBP7.52□□□□□ -1.21
NUP54-208ENST00000508604 SVOPQ8N4V2 548 aa7.52□□□□□ -1.21
NUP54-208ENST00000508604 ZNF395Q9H8N7 513 aaPredicted RBP7.52□□□□□ -1.21
NUP54-208ENST00000508604 KRT76Q01546 638 aa7.51□□□□□ -1.21
NUP54-208ENST00000508604 TMEM151AQ8N4L1 468 aa7.51□□□□□ -1.21
NUP54-208ENST00000508604 ADH1AP07327 375 aa7.51□□□□□ -1.21
NUP54-208ENST00000508604 VWA5B2Q8N398 1253 aa7.51□□□□□ -1.21
NUP54-208ENST00000508604 ZNF784Q8NCA9 323 aaPredicted RBP7.51□□□□□ -1.21
NUP54-208ENST00000508604 FAM117AQ9C073 453 aa7.51□□□□□ -1.21
NUP54-208ENST00000508604 GPBP1L1Q9HC44 474 aaPredicted RBP7.51□□□□□ -1.21
NUP54-208ENST00000508604 TMPRSS4Q9NRS4 437 aa7.51□□□□□ -1.21
NUP54-208ENST00000508604 ADAMTS8Q9UP79 889 aa7.51□□□□□ -1.21
NUP54-208ENST00000508604 USP17L8P0C7I0 530 aa7.5□□□□□ -1.21
NUP54-208ENST00000508604 GDF11O95390 407 aa7.49□□□□□ -1.21
NUP54-208ENST00000508604 RNF217Q8TC41 542 aa7.49□□□□□ -1.21
NUP54-208ENST00000508604 OCSTAMPQ9BR26 566 aa7.49□□□□□ -1.21
NUP54-208ENST00000508604 PTGIRP43119 386 aa7.48□□□□□ -1.21
NUP54-208ENST00000508604 SEPT12Q8IYM1 358 aa7.48□□□□□ -1.21
NUP54-208ENST00000508604 ERVH48-1M5A8F1 160 aa7.47□□□□□ -1.21
NUP54-208ENST00000508604 MARSP56192 900 aaKnown RBP7.47□□□□□ -1.21
NUP54-208ENST00000508604 RASSF7Q02833 373 aa7.47□□□□□ -1.21
NUP54-208ENST00000508604 LYSMD3Q7Z3D4 306 aa7.47□□□□□ -1.21
NUP54-208ENST00000508604 KCTD17Q8N5Z5 321 aa7.47□□□□□ -1.21
NUP54-208ENST00000508604 EPS8L1Q8TE68 723 aa7.47□□□□□ -1.21
NUP54-208ENST00000508604 FBXO31Q5XUX0 539 aaPredicted RBP7.47□□□□□ -1.21
NUP54-208ENST00000508604 ZNF385CQ66K41 422 aaPredicted RBP7.47□□□□□ -1.21
NUP54-208ENST00000508604 RFC5P40937 340 aa7.46□□□□□ -1.22
NUP54-208ENST00000508604 RNFT1Q5M7Z0 435 aa7.46□□□□□ -1.22
NUP54-208ENST00000508604 HMX1Q9NP08 348 aaPredicted RBP7.46□□□□□ -1.22
NUP54-208ENST00000508604 SLURP2P0DP57 97 aa7.45□□□□□ -1.22
NUP54-208ENST00000508604 MAP3K10Q02779 954 aa7.45□□□□□ -1.22
NUP54-208ENST00000508604 CCDC125Q86Z20 511 aa7.45□□□□□ -1.22
NUP54-208ENST00000508604 PCMTD1Q96MG8 357 aaPredicted RBP7.45□□□□□ -1.22
NUP54-208ENST00000508604 ESPNB1AK53 854 aa7.44□□□□□ -1.22
NUP54-208ENST00000508604 LILRA1O75019 489 aa7.44□□□□□ -1.22
NUP54-208ENST00000508604 TMEM259Q4ZIN3 620 aa7.44□□□□□ -1.22
NUP54-208ENST00000508604 FOXR1Q6PIV2 292 aa7.44□□□□□ -1.22
NUP54-208ENST00000508604 CYLDQ9NQC7 956 aa7.44□□□□□ -1.22
NUP54-208ENST00000508604 ADD1P35611 737 aaKnown RBP7.44□□□□□ -1.22
NUP54-208ENST00000508604 FOXD4L5Q5VV16 416 aaPredicted RBP7.44□□□□□ -1.22
NUP54-208ENST00000508604 SCARF2Q96GP6 870 aaPredicted RBP7.44□□□□□ -1.22
NUP54-208ENST00000508604 ENAMQ9NRM1 1142 aa7.44□□□□□ -1.22
NUP54-208ENST00000508604 SENP3-EIF4A1A0A087X0R7 540 aa7.43□□□□□ -1.22
NUP54-208ENST00000508604 ZBBXA8MT70 800 aa7.43□□□□□ -1.22
NUP54-208ENST00000508604 ATP5J2-PTCD1G3V325 749 aa7.43□□□□□ -1.22
NUP54-208ENST00000508604 PRICKLE2Q7Z3G6 844 aa7.43□□□□□ -1.22
NUP54-208ENST00000508604 ZNF592Q92610 1267 aa7.43□□□□□ -1.22
NUP54-208ENST00000508604 GMCL1Q96IK5 515 aa7.43□□□□□ -1.22
NUP54-208ENST00000508604 PCDHB9Q9Y5E1 797 aa7.43□□□□□ -1.22
NUP54-208ENST00000508604 ADAMTS2O95450 1211 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms