RNA–Protein interactions for RNA: ENST00000498056.1

CPNE1-227, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 362 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-227ENST00000498056 FLT4P35916 1363 aa18.35■□□□□ 0.53
CPNE1-227ENST00000498056 PPM1GO15355 546 aaPredicted RBP18.35■□□□□ 0.53
CPNE1-227ENST00000498056 PPP2R1AP30153 589 aa18.35■□□□□ 0.53
CPNE1-227ENST00000498056 MEX3CQ5U5Q3 659 aaKnown RBP18.35■□□□□ 0.53
CPNE1-227ENST00000498056 CHRNA2Q15822 529 aa18.34■□□□□ 0.53
CPNE1-227ENST00000498056 CAMTA1Q9Y6Y1 1673 aa18.34■□□□□ 0.53
CPNE1-227ENST00000498056 COL3A1P02461 1466 aaPredicted RBP18.33■□□□□ 0.53
CPNE1-227ENST00000498056 BLMP54132 1417 aaPredicted RBP18.33■□□□□ 0.53
CPNE1-227ENST00000498056 RGPD1P0DJD0 1748 aa18.33■□□□□ 0.52
CPNE1-227ENST00000498056 AMPHP49418 695 aa18.33■□□□□ 0.52
CPNE1-227ENST00000498056 ILDR1Q86SU0 546 aaPredicted RBP18.32■□□□□ 0.52
CPNE1-227ENST00000498056 ARHGEF25Q86VW2 580 aa18.32■□□□□ 0.52
CPNE1-227ENST00000498056 KIF24Q5T7B8 1368 aa18.31■□□□□ 0.52
CPNE1-227ENST00000498056 POLKQ9UBT6 870 aa18.31■□□□□ 0.52
CPNE1-227ENST00000498056 COL5A2P05997 1499 aaPredicted RBP18.31■□□□□ 0.52
CPNE1-227ENST00000498056 HOXC9P31274 260 aa18.3■□□□□ 0.52
CPNE1-227ENST00000498056 C8orf37Q96NL8 207 aa18.3■□□□□ 0.52
CPNE1-227ENST00000498056 MTHFSP49914 203 aa18.29■□□□□ 0.52
CPNE1-227ENST00000498056 SLIT2O94813 1529 aa18.28■□□□□ 0.52
CPNE1-227ENST00000498056 INSRP06213 1382 aa18.28■□□□□ 0.52
CPNE1-227ENST00000498056 PARP4Q9UKK3 1724 aaKnown RBP18.27■□□□□ 0.52
CPNE1-227ENST00000498056 CFAP53Q96M91 514 aa18.27■□□□□ 0.52
CPNE1-227ENST00000498056 FAM83GA6ND36 823 aa18.26■□□□□ 0.51
CPNE1-227ENST00000498056 IP6K1Q92551 441 aa18.26■□□□□ 0.51
CPNE1-227ENST00000498056 LTV1Q96GA3 475 aaPredicted RBP18.26■□□□□ 0.51
CPNE1-227ENST00000498056 HSP90AB2PQ58FF8 381 aa18.25■□□□□ 0.51
CPNE1-227ENST00000498056 BTG4Q9NY30 223 aa18.25■□□□□ 0.51
CPNE1-227ENST00000498056 MIER1Q8N108 512 aa18.24■□□□□ 0.51
CPNE1-227ENST00000498056 NGLY1Q96IV0 654 aa18.24■□□□□ 0.51
CPNE1-227ENST00000498056 STRN4Q9NRL3 753 aa18.24■□□□□ 0.51
CPNE1-227ENST00000498056 AXIN2Q9Y2T1 843 aa18.24■□□□□ 0.51
CPNE1-227ENST00000498056 ERBB3P21860 1342 aa18.23■□□□□ 0.51
CPNE1-227ENST00000498056 CSB-PGBD3P0DP91 1061 aa18.23■□□□□ 0.51
CPNE1-227ENST00000498056 ANKRD24Q8TF21 1146 aa18.23■□□□□ 0.51
CPNE1-227ENST00000498056 AFF2P51816 1311 aa18.23■□□□□ 0.51
CPNE1-227ENST00000498056 MRS2Q9HD23 443 aa18.22■□□□□ 0.51
CPNE1-227ENST00000498056 VIRMAQ69YN4 1812 aaKnown RBP18.21■□□□□ 0.51
CPNE1-227ENST00000498056 EIF4A2Q14240 407 aaKnown RBP18.21■□□□□ 0.51
CPNE1-227ENST00000498056 BCL9LQ86UU0 1499 aa18.2■□□□□ 0.5
CPNE1-227ENST00000498056 DIAPH1O60610 1272 aaKnown RBP18.2■□□□□ 0.5
CPNE1-227ENST00000498056 CRB1P82279 1406 aa18.2■□□□□ 0.5
CPNE1-227ENST00000498056 WDR17Q8IZU2 1322 aa18.2■□□□□ 0.5
CPNE1-227ENST00000498056 GLI3P10071 1580 aa18.19■□□□□ 0.5
CPNE1-227ENST00000498056 EVA1CP58658 441 aa18.19■□□□□ 0.5
CPNE1-227ENST00000498056 CCDC184Q52MB2 194 aa18.19■□□□□ 0.5
CPNE1-227ENST00000498056 PKD1L3Q7Z443 1732 aa18.18■□□□□ 0.5
CPNE1-227ENST00000498056 SHANK3Q9BYB0 1731 aa18.18■□□□□ 0.5
CPNE1-227ENST00000498056 U2SURPO15042 1029 aaKnown RBP18.18■□□□□ 0.5
CPNE1-227ENST00000498056 USP21Q9UK80 565 aa18.18■□□□□ 0.5
CPNE1-227ENST00000498056 LRRC37A3O60309 1634 aa18.18■□□□□ 0.5
CPNE1-227ENST00000498056 TOM1L2Q6ZVM7 507 aa18.17■□□□□ 0.5
CPNE1-227ENST00000498056 DLG5Q8TDM6 1919 aa18.17■□□□□ 0.5
CPNE1-227ENST00000498056 LARP1Q6PKG0 1096 aaKnown RBP18.16■□□□□ 0.5
CPNE1-227ENST00000498056 UNC5CLQ8IV45 518 aa18.16■□□□□ 0.5
CPNE1-227ENST00000498056 FNBP4Q8N3X1 1017 aaPredicted RBP18.16■□□□□ 0.5
CPNE1-227ENST00000498056 USHBP1Q8N6Y0 703 aa18.16■□□□□ 0.5
CPNE1-227ENST00000498056 NLRP2Q9NX02 1062 aa18.16■□□□□ 0.5
CPNE1-227ENST00000498056 CCDC9Q9Y3X0 531 aaKnown RBP18.16■□□□□ 0.5
CPNE1-227ENST00000498056 CCER2I3L3R5 266 aa18.15■□□□□ 0.5
CPNE1-227ENST00000498056 IL13P35225 146 aa18.15■□□□□ 0.5
CPNE1-227ENST00000498056 WDR43Q15061 677 aaKnown RBP eCLIP18.15■□□□□ 0.5
CPNE1-227ENST00000498056 PHF23Q9BUL5 403 aaPredicted RBP18.15■□□□□ 0.5
CPNE1-227ENST00000498056 NUDCQ9Y266 331 aa18.15■□□□□ 0.5
CPNE1-227ENST00000498056 ATRNO75882 1429 aa18.15■□□□□ 0.5
CPNE1-227ENST00000498056 NCAPD2Q15021 1401 aa18.15■□□□□ 0.5
CPNE1-227ENST00000498056 THSD7AQ9UPZ6 1657 aa18.14■□□□□ 0.49
CPNE1-227ENST00000498056 IGSF1Q8N6C5 1336 aa18.14■□□□□ 0.49
CPNE1-227ENST00000498056 USP35Q9P2H5 1018 aa18.13■□□□□ 0.49
CPNE1-227ENST00000498056 BRWD3Q6RI45 1802 aa18.13■□□□□ 0.49
CPNE1-227ENST00000498056 MEGF6O75095 1541 aa18.13■□□□□ 0.49
CPNE1-227ENST00000498056 U2AF1L5P0DN76 240 aaPredicted RBP18.12■□□□□ 0.49
CPNE1-227ENST00000498056 U2AF1Q01081 240 aaKnown RBP eCLIP18.12■□□□□ 0.49
CPNE1-227ENST00000498056 EYA1Q99502 592 aa18.12■□□□□ 0.49
CPNE1-227ENST00000498056 HMOX1P09601 288 aa18.11■□□□□ 0.49
CPNE1-227ENST00000498056 NBPF6Q5VWK0 638 aa18.11■□□□□ 0.49
CPNE1-227ENST00000498056 NBPF4Q96M43 638 aa18.11■□□□□ 0.49
CPNE1-227ENST00000498056 SPATA31A5Q5VU36 1347 aa18.1■□□□□ 0.49
CPNE1-227ENST00000498056 SPATA31A7Q8IWB4 1347 aa18.1■□□□□ 0.49
CPNE1-227ENST00000498056 VPS72Q15906 364 aa18.1■□□□□ 0.49
CPNE1-227ENST00000498056 ZNF772Q68DY9 489 aaPredicted RBP18.1■□□□□ 0.49
CPNE1-227ENST00000498056 AEBP1Q8IUX7 1158 aa18.1■□□□□ 0.49
CPNE1-227ENST00000498056 TRPC5Q9UL62 973 aaPredicted RBP18.1■□□□□ 0.49
CPNE1-227ENST00000498056 KDRP35968 1356 aa18.09■□□□□ 0.49
CPNE1-227ENST00000498056 SPATA31A1Q5TZJ5 1347 aa18.09■□□□□ 0.49
CPNE1-227ENST00000498056 SULT6B1Q6IMI4 303 aa18.09■□□□□ 0.49
CPNE1-227ENST00000498056 CARD10Q9BWT7 1032 aa18.09■□□□□ 0.49
CPNE1-227ENST00000498056 FAM9BQ8IZU0 186 aa18.08■□□□□ 0.48
CPNE1-227ENST00000498056 DISP2A7MBM2 1401 aa18.07■□□□□ 0.48
CPNE1-227ENST00000498056 OVOS2A0A0G2JMS6 1433 aa18.06■□□□□ 0.48
CPNE1-227ENST00000498056 A0A0G2JS52 829 aa18.06■□□□□ 0.48
CPNE1-227ENST00000498056 MYT1Q01538 1121 aa18.06■□□□□ 0.48
CPNE1-227ENST00000498056 TCP11L2Q8N4U5 519 aa18.06■□□□□ 0.48
CPNE1-227ENST00000498056 DOT1LQ8TEK3 1739 aa18.06■□□□□ 0.48
CPNE1-227ENST00000498056 TNS2Q63HR2 1409 aa18.06■□□□□ 0.48
CPNE1-227ENST00000498056 RAPGEF4Q8WZA2 1011 aa18.05■□□□□ 0.48
CPNE1-227ENST00000498056 PRKAR2BP31323 418 aa18.04■□□□□ 0.48
CPNE1-227ENST00000498056 PNISRQ8TF01 805 aaKnown RBP18.04■□□□□ 0.48
CPNE1-227ENST00000498056 GJD4Q96KN9 370 aaPredicted RBP18.04■□□□□ 0.48
CPNE1-227ENST00000498056 RSPH6AQ9H0K4 717 aa18.04■□□□□ 0.48
CPNE1-227ENST00000498056 QTRT2Q9H974 415 aaKnown RBP18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms