RNA–Protein interactions for RNA: ENST00000462613.1

SF3B1-206, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 3

Gene SF3B1, Length 141 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-206ENST00000462613 ZRANB1Q9UGI0 708 aa8.66□□□□□ -1.02
SF3B1-206ENST00000462613 BLMP54132 1417 aaPredicted RBP8.65□□□□□ -1.02
SF3B1-206ENST00000462613 CSB-PGBD3P0DP91 1061 aa8.65□□□□□ -1.02
SF3B1-206ENST00000462613 CC2D1BQ5T0F9 858 aaKnown RBP8.65□□□□□ -1.02
SF3B1-206ENST00000462613 QTRT2Q9H974 415 aaKnown RBP8.65□□□□□ -1.02
SF3B1-206ENST00000462613 STRN4Q9NRL3 753 aa8.65□□□□□ -1.02
SF3B1-206ENST00000462613 FLT4P35916 1363 aa8.64□□□□□ -1.03
SF3B1-206ENST00000462613 PPM1GO15355 546 aaPredicted RBP8.64□□□□□ -1.03
SF3B1-206ENST00000462613 PER1O15534 1290 aaPredicted RBP8.64□□□□□ -1.03
SF3B1-206ENST00000462613 TNNT2P45379 298 aaPredicted RBP8.64□□□□□ -1.03
SF3B1-206ENST00000462613 CNGB1Q14028 1251 aaPredicted RBP8.64□□□□□ -1.03
SF3B1-206ENST00000462613 AMER1Q5JTC6 1135 aaPredicted RBP8.64□□□□□ -1.03
SF3B1-206ENST00000462613 COL5A2P05997 1499 aaPredicted RBP8.64□□□□□ -1.03
SF3B1-206ENST00000462613 BCL9LQ86UU0 1499 aa8.64□□□□□ -1.03
SF3B1-206ENST00000462613 CAMTA1Q9Y6Y1 1673 aa8.63□□□□□ -1.03
SF3B1-206ENST00000462613 MAP3K19Q56UN5 1328 aa8.63□□□□□ -1.03
SF3B1-206ENST00000462613 A0A0G2JS52 829 aa8.63□□□□□ -1.03
SF3B1-206ENST00000462613 RXRBP28702 533 aa8.63□□□□□ -1.03
SF3B1-206ENST00000462613 RBM6P78332 1123 aaKnown RBP8.63□□□□□ -1.03
SF3B1-206ENST00000462613 MYT1Q01538 1121 aa8.63□□□□□ -1.03
SF3B1-206ENST00000462613 RRS1Q15050 365 aaKnown RBP8.63□□□□□ -1.03
SF3B1-206ENST00000462613 TOM1L2Q6ZVM7 507 aa8.63□□□□□ -1.03
SF3B1-206ENST00000462613 IP6K1Q92551 441 aa8.63□□□□□ -1.03
SF3B1-206ENST00000462613 WNK3Q9BYP7 1800 aa8.63□□□□□ -1.03
SF3B1-206ENST00000462613 KAT6BQ8WYB5 2073 aa8.63□□□□□ -1.03
SF3B1-206ENST00000462613 RGPD2P0DJD1 1756 aa8.63□□□□□ -1.03
SF3B1-206ENST00000462613 ATRNO75882 1429 aa8.63□□□□□ -1.03
SF3B1-206ENST00000462613 HOXC9P31274 260 aa8.62□□□□□ -1.03
SF3B1-206ENST00000462613 VPS72Q15906 364 aa8.62□□□□□ -1.03
SF3B1-206ENST00000462613 GJD4Q96KN9 370 aaPredicted RBP8.62□□□□□ -1.03
SF3B1-206ENST00000462613 CRB1P82279 1406 aa8.62□□□□□ -1.03
SF3B1-206ENST00000462613 WDR17Q8IZU2 1322 aa8.61□□□□□ -1.03
SF3B1-206ENST00000462613 CFAP53Q96M91 514 aa8.61□□□□□ -1.03
SF3B1-206ENST00000462613 USP35Q9P2H5 1018 aa8.61□□□□□ -1.03
SF3B1-206ENST00000462613 THRAP3Q9Y2W1 955 aaKnown RBP8.61□□□□□ -1.03
SF3B1-206ENST00000462613 CDK12Q9NYV4 1490 aaPredicted RBP8.61□□□□□ -1.03
SF3B1-206ENST00000462613 INSRP06213 1382 aa8.61□□□□□ -1.03
SF3B1-206ENST00000462613 PEAK1Q9H792 1746 aa8.6□□□□□ -1.03
SF3B1-206ENST00000462613 PARP4Q9UKK3 1724 aaKnown RBP8.6□□□□□ -1.03
SF3B1-206ENST00000462613 ERBB3P21860 1342 aa8.6□□□□□ -1.03
SF3B1-206ENST00000462613 RALBP1Q15311 655 aa8.6□□□□□ -1.03
SF3B1-206ENST00000462613 ANKRD24Q8TF21 1146 aa8.6□□□□□ -1.03
SF3B1-206ENST00000462613 LTV1Q96GA3 475 aaPredicted RBP8.6□□□□□ -1.03
SF3B1-206ENST00000462613 CDCA7Q9BWT1 371 aaPredicted RBP8.6□□□□□ -1.03
SF3B1-206ENST00000462613 NLRP2Q9NX02 1062 aa8.6□□□□□ -1.03
SF3B1-206ENST00000462613 GLI3P10071 1580 aa8.6□□□□□ -1.03
SF3B1-206ENST00000462613 BRWD3Q6RI45 1802 aa8.59□□□□□ -1.03
SF3B1-206ENST00000462613 SPATA31A5Q5VU36 1347 aa8.59□□□□□ -1.03
SF3B1-206ENST00000462613 SPATA31A7Q8IWB4 1347 aa8.59□□□□□ -1.03
SF3B1-206ENST00000462613 LARP1Q6PKG0 1096 aaKnown RBP8.59□□□□□ -1.03
SF3B1-206ENST00000462613 POTEAQ6S8J7 498 aa8.59□□□□□ -1.03
SF3B1-206ENST00000462613 TCP11L2Q8N4U5 519 aa8.59□□□□□ -1.03
SF3B1-206ENST00000462613 POLKQ9UBT6 870 aa8.59□□□□□ -1.03
SF3B1-206ENST00000462613 RGS17Q9UGC6 210 aaPredicted RBP8.59□□□□□ -1.03
SF3B1-206ENST00000462613 AXIN2Q9Y2T1 843 aa8.59□□□□□ -1.03
SF3B1-206ENST00000462613 EMILIN1Q9Y6C2 1016 aa8.59□□□□□ -1.03
SF3B1-206ENST00000462613 SPATA31A1Q5TZJ5 1347 aa8.58□□□□□ -1.04
SF3B1-206ENST00000462613 ANP32CO43423 234 aa8.58□□□□□ -1.04
SF3B1-206ENST00000462613 FBLN1P23142 703 aa8.58□□□□□ -1.04
SF3B1-206ENST00000462613 MTHFSP49914 203 aa8.58□□□□□ -1.04
SF3B1-206ENST00000462613 CARD10Q9BWT7 1032 aa8.58□□□□□ -1.04
SF3B1-206ENST00000462613 FAM98CQ17RN3 349 aaKnown RBP8.57□□□□□ -1.04
SF3B1-206ENST00000462613 HSP90AB2PQ58FF8 381 aa8.57□□□□□ -1.04
SF3B1-206ENST00000462613 BARGINQ6ZT62 677 aa8.57□□□□□ -1.04
SF3B1-206ENST00000462613 NUDCQ9Y266 331 aa8.57□□□□□ -1.04
SF3B1-206ENST00000462613 PARD3Q8TEW0 1356 aa8.57□□□□□ -1.04
SF3B1-206ENST00000462613 THSD7AQ9UPZ6 1657 aa8.56□□□□□ -1.04
SF3B1-206ENST00000462613 DIAPH1O60610 1272 aaKnown RBP8.56□□□□□ -1.04
SF3B1-206ENST00000462613 IL2RBP14784 551 aa8.56□□□□□ -1.04
SF3B1-206ENST00000462613 RAPGEF4Q8WZA2 1011 aa8.56□□□□□ -1.04
SF3B1-206ENST00000462613 MYBBP1AQ9BQG0 1328 aaKnown RBP8.55□□□□□ -1.04
SF3B1-206ENST00000462613 NEFMP07197 916 aa8.55□□□□□ -1.04
SF3B1-206ENST00000462613 PPP2R1AP30153 589 aa8.55□□□□□ -1.04
SF3B1-206ENST00000462613 PDE3BQ13370 1112 aa8.55□□□□□ -1.04
SF3B1-206ENST00000462613 DDB1Q16531 1140 aa8.55□□□□□ -1.04
SF3B1-206ENST00000462613 RGS12O14924 1447 aa8.54□□□□□ -1.04
SF3B1-206ENST00000462613 LRRC37A3O60309 1634 aa8.54□□□□□ -1.04
SF3B1-206ENST00000462613 EXOC5O00471 708 aa8.54□□□□□ -1.04
SF3B1-206ENST00000462613 ONECUT3O60422 494 aaPredicted RBP8.54□□□□□ -1.04
SF3B1-206ENST00000462613 TATP17735 454 aaPredicted RBP8.54□□□□□ -1.04
SF3B1-206ENST00000462613 EIF4A2Q14240 407 aaKnown RBP8.54□□□□□ -1.04
SF3B1-206ENST00000462613 SEPT12Q8IYM1 358 aa8.54□□□□□ -1.04
SF3B1-206ENST00000462613 VIRMAQ69YN4 1812 aaKnown RBP8.54□□□□□ -1.04
SF3B1-206ENST00000462613 RGPD1P0DJD0 1748 aa8.54□□□□□ -1.04
SF3B1-206ENST00000462613 PLEKHG2Q9H7P9 1386 aa8.53□□□□□ -1.04
SF3B1-206ENST00000462613 U2SURPO15042 1029 aaKnown RBP8.53□□□□□ -1.04
SF3B1-206ENST00000462613 NBPF6Q5VWK0 638 aa8.53□□□□□ -1.04
SF3B1-206ENST00000462613 KRT27Q7Z3Y8 459 aa8.53□□□□□ -1.04
SF3B1-206ENST00000462613 NBPF4Q96M43 638 aa8.53□□□□□ -1.04
SF3B1-206ENST00000462613 PNNQ9H307 717 aaKnown RBP8.53□□□□□ -1.04
SF3B1-206ENST00000462613 PRKRIP1Q9H875 184 aaPredicted RBP8.53□□□□□ -1.04
SF3B1-206ENST00000462613 PKD1L3Q7Z443 1732 aa8.52□□□□□ -1.05
SF3B1-206ENST00000462613 EYA1Q99502 592 aa8.52□□□□□ -1.05
SF3B1-206ENST00000462613 SPG7Q9UQ90 795 aa8.52□□□□□ -1.05
SF3B1-206ENST00000462613 TNS2Q63HR2 1409 aa8.52□□□□□ -1.05
SF3B1-206ENST00000462613 SBF2Q86WG5 1849 aa8.52□□□□□ -1.05
SF3B1-206ENST00000462613 IGSF1Q8N6C5 1336 aa8.52□□□□□ -1.05
SF3B1-206ENST00000462613 IL13P35225 146 aa8.51□□□□□ -1.05
SF3B1-206ENST00000462613 USHBP1Q8N6Y0 703 aa8.51□□□□□ -1.05
SF3B1-206ENST00000462613 OVOS2A0A0G2JMS6 1433 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms