RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 MEX3CQ5U5Q3 659 aaKnown RBP13.76□□□□□ -0.21
UPF2-204ENST00000460569 ARHGEF25Q86VW2 580 aa13.76□□□□□ -0.21
UPF2-204ENST00000460569 FLT4P35916 1363 aa13.75□□□□□ -0.21
UPF2-204ENST00000460569 POLKQ9UBT6 870 aa13.75□□□□□ -0.21
UPF2-204ENST00000460569 NRAPQ86VF7 1730 aa13.75□□□□□ -0.21
UPF2-204ENST00000460569 KIF24Q5T7B8 1368 aa13.74□□□□□ -0.21
UPF2-204ENST00000460569 BLMP54132 1417 aaPredicted RBP13.73□□□□□ -0.21
UPF2-204ENST00000460569 FAM208AQ9UK61 1670 aaKnown RBP13.73□□□□□ -0.21
UPF2-204ENST00000460569 MTHFSP49914 203 aa13.73□□□□□ -0.21
UPF2-204ENST00000460569 C8orf37Q96NL8 207 aa13.73□□□□□ -0.21
UPF2-204ENST00000460569 CAMTA1Q9Y6Y1 1673 aa13.72□□□□□ -0.21
UPF2-204ENST00000460569 FAM83GA6ND36 823 aa13.72□□□□□ -0.21
UPF2-204ENST00000460569 HOXC9P31274 260 aa13.72□□□□□ -0.21
UPF2-204ENST00000460569 IP6K1Q92551 441 aa13.72□□□□□ -0.21
UPF2-204ENST00000460569 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.72□□□□□ -0.21
UPF2-204ENST00000460569 SLIT2O94813 1529 aa13.71□□□□□ -0.21
UPF2-204ENST00000460569 COL3A1P02461 1466 aaPredicted RBP13.71□□□□□ -0.21
UPF2-204ENST00000460569 COL5A2P05997 1499 aaPredicted RBP13.71□□□□□ -0.21
UPF2-204ENST00000460569 RGPD2P0DJD1 1756 aa13.71□□□□□ -0.22
UPF2-204ENST00000460569 INSRP06213 1382 aa13.71□□□□□ -0.22
UPF2-204ENST00000460569 HSP90AB2PQ58FF8 381 aa13.7□□□□□ -0.22
UPF2-204ENST00000460569 NGLY1Q96IV0 654 aa13.7□□□□□ -0.22
UPF2-204ENST00000460569 CFAP53Q96M91 514 aa13.7□□□□□ -0.22
UPF2-204ENST00000460569 BTG4Q9NY30 223 aa13.7□□□□□ -0.22
UPF2-204ENST00000460569 LTV1Q96GA3 475 aaPredicted RBP13.69□□□□□ -0.22
UPF2-204ENST00000460569 AXIN2Q9Y2T1 843 aa13.69□□□□□ -0.22
UPF2-204ENST00000460569 RGPD1P0DJD0 1748 aa13.67□□□□□ -0.22
UPF2-204ENST00000460569 ERBB3P21860 1342 aa13.67□□□□□ -0.22
UPF2-204ENST00000460569 AFF2P51816 1311 aa13.67□□□□□ -0.22
UPF2-204ENST00000460569 CSB-PGBD3P0DP91 1061 aa13.67□□□□□ -0.22
UPF2-204ENST00000460569 MIER1Q8N108 512 aa13.67□□□□□ -0.22
UPF2-204ENST00000460569 ANKRD24Q8TF21 1146 aa13.67□□□□□ -0.22
UPF2-204ENST00000460569 STRN4Q9NRL3 753 aa13.67□□□□□ -0.22
UPF2-204ENST00000460569 DIAPH1O60610 1272 aaKnown RBP13.66□□□□□ -0.22
UPF2-204ENST00000460569 EVA1CP58658 441 aa13.66□□□□□ -0.22
UPF2-204ENST00000460569 EIF4A2Q14240 407 aaKnown RBP13.66□□□□□ -0.22
UPF2-204ENST00000460569 BCL9LQ86UU0 1499 aa13.66□□□□□ -0.22
UPF2-204ENST00000460569 WDR17Q8IZU2 1322 aa13.65□□□□□ -0.22
UPF2-204ENST00000460569 WNK3Q9BYP7 1800 aa13.65□□□□□ -0.22
UPF2-204ENST00000460569 FNBP4Q8N3X1 1017 aaPredicted RBP13.65□□□□□ -0.22
UPF2-204ENST00000460569 MRS2Q9HD23 443 aa13.65□□□□□ -0.22
UPF2-204ENST00000460569 USP21Q9UK80 565 aa13.65□□□□□ -0.22
UPF2-204ENST00000460569 CCDC184Q52MB2 194 aa13.64□□□□□ -0.23
UPF2-204ENST00000460569 UNC5CLQ8IV45 518 aa13.64□□□□□ -0.23
UPF2-204ENST00000460569 CRB1P82279 1406 aa13.64□□□□□ -0.23
UPF2-204ENST00000460569 IL13P35225 146 aa13.63□□□□□ -0.23
UPF2-204ENST00000460569 LARP1Q6PKG0 1096 aaKnown RBP13.63□□□□□ -0.23
UPF2-204ENST00000460569 TOM1L2Q6ZVM7 507 aa13.63□□□□□ -0.23
UPF2-204ENST00000460569 NLRP2Q9NX02 1062 aa13.63□□□□□ -0.23
UPF2-204ENST00000460569 U2SURPO15042 1029 aaKnown RBP13.62□□□□□ -0.23
UPF2-204ENST00000460569 PHF23Q9BUL5 403 aaPredicted RBP13.62□□□□□ -0.23
UPF2-204ENST00000460569 NUDCQ9Y266 331 aa13.62□□□□□ -0.23
UPF2-204ENST00000460569 CCDC9Q9Y3X0 531 aaKnown RBP13.62□□□□□ -0.23
UPF2-204ENST00000460569 CCER2I3L3R5 266 aa13.61□□□□□ -0.23
UPF2-204ENST00000460569 USHBP1Q8N6Y0 703 aa13.61□□□□□ -0.23
UPF2-204ENST00000460569 ATRNO75882 1429 aa13.61□□□□□ -0.23
UPF2-204ENST00000460569 PARP4Q9UKK3 1724 aaKnown RBP13.61□□□□□ -0.23
UPF2-204ENST00000460569 GLI3P10071 1580 aa13.6□□□□□ -0.23
UPF2-204ENST00000460569 NCAPD2Q15021 1401 aa13.6□□□□□ -0.23
UPF2-204ENST00000460569 WDR43Q15061 677 aaKnown RBP eCLIP13.6□□□□□ -0.23
UPF2-204ENST00000460569 VPS72Q15906 364 aa13.6□□□□□ -0.23
UPF2-204ENST00000460569 NBPF6Q5VWK0 638 aa13.6□□□□□ -0.23
UPF2-204ENST00000460569 NBPF4Q96M43 638 aa13.6□□□□□ -0.23
UPF2-204ENST00000460569 EYA1Q99502 592 aa13.6□□□□□ -0.23
UPF2-204ENST00000460569 USP35Q9P2H5 1018 aa13.6□□□□□ -0.23
UPF2-204ENST00000460569 IGSF1Q8N6C5 1336 aa13.6□□□□□ -0.23
UPF2-204ENST00000460569 U2AF1L5P0DN76 240 aaPredicted RBP13.59□□□□□ -0.23
UPF2-204ENST00000460569 U2AF1Q01081 240 aaKnown RBP eCLIP13.59□□□□□ -0.23
UPF2-204ENST00000460569 ZNF772Q68DY9 489 aaPredicted RBP13.59□□□□□ -0.23
UPF2-204ENST00000460569 CARD10Q9BWT7 1032 aa13.59□□□□□ -0.23
UPF2-204ENST00000460569 TRPC5Q9UL62 973 aaPredicted RBP13.59□□□□□ -0.23
UPF2-204ENST00000460569 SPATA31A5Q5VU36 1347 aa13.59□□□□□ -0.23
UPF2-204ENST00000460569 SPATA31A7Q8IWB4 1347 aa13.59□□□□□ -0.23
UPF2-204ENST00000460569 SPATA31A1Q5TZJ5 1347 aa13.58□□□□□ -0.24
UPF2-204ENST00000460569 HMOX1P09601 288 aa13.57□□□□□ -0.24
UPF2-204ENST00000460569 SULT6B1Q6IMI4 303 aa13.57□□□□□ -0.24
UPF2-204ENST00000460569 AEBP1Q8IUX7 1158 aa13.57□□□□□ -0.24
UPF2-204ENST00000460569 QTRT2Q9H974 415 aaKnown RBP13.57□□□□□ -0.24
UPF2-204ENST00000460569 KDRP35968 1356 aa13.57□□□□□ -0.24
UPF2-204ENST00000460569 MEGF6O75095 1541 aa13.56□□□□□ -0.24
UPF2-204ENST00000460569 TCP11L2Q8N4U5 519 aa13.56□□□□□ -0.24
UPF2-204ENST00000460569 LRRC37A3O60309 1634 aa13.56□□□□□ -0.24
UPF2-204ENST00000460569 PKD1L3Q7Z443 1732 aa13.56□□□□□ -0.24
UPF2-204ENST00000460569 PNISRQ8TF01 805 aaKnown RBP13.55□□□□□ -0.24
UPF2-204ENST00000460569 GJD4Q96KN9 370 aaPredicted RBP13.55□□□□□ -0.24
UPF2-204ENST00000460569 THSD7AQ9UPZ6 1657 aa13.55□□□□□ -0.24
UPF2-204ENST00000460569 DISP2A7MBM2 1401 aa13.55□□□□□ -0.24
UPF2-204ENST00000460569 SHANK3Q9BYB0 1731 aa13.54□□□□□ -0.24
UPF2-204ENST00000460569 FAM9BQ8IZU0 186 aa13.54□□□□□ -0.24
UPF2-204ENST00000460569 RAPGEF4Q8WZA2 1011 aa13.54□□□□□ -0.24
UPF2-204ENST00000460569 RGS17Q9UGC6 210 aaPredicted RBP13.54□□□□□ -0.24
UPF2-204ENST00000460569 THRAP3Q9Y2W1 955 aaKnown RBP13.54□□□□□ -0.24
UPF2-204ENST00000460569 A0A0G2JS52 829 aa13.53□□□□□ -0.24
UPF2-204ENST00000460569 IL2RBP14784 551 aa13.53□□□□□ -0.24
UPF2-204ENST00000460569 TATP17735 454 aaPredicted RBP13.53□□□□□ -0.24
UPF2-204ENST00000460569 PRKAR2BP31323 418 aa13.53□□□□□ -0.24
UPF2-204ENST00000460569 MYT1Q01538 1121 aa13.53□□□□□ -0.24
UPF2-204ENST00000460569 FAM98CQ17RN3 349 aaKnown RBP13.53□□□□□ -0.24
UPF2-204ENST00000460569 RSPH6AQ9H0K4 717 aa13.53□□□□□ -0.24
UPF2-204ENST00000460569 ADAMTS8Q9UP79 889 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms