RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 UNC5CLQ8IV45 518 aa30.11■■■□□ 2.41
SHMT1-203ENST00000354098 PPM1GO15355 546 aaPredicted RBP30.11■■■□□ 2.41
SHMT1-203ENST00000354098 IP6K1Q92551 441 aa30.11■■■□□ 2.41
SHMT1-203ENST00000354098 HOXC9P31274 260 aa30.1■■■□□ 2.41
SHMT1-203ENST00000354098 PEAK1Q9H792 1746 aa30.09■■■□□ 2.41
SHMT1-203ENST00000354098 NWD2Q9ULI1 1742 aa30.09■■■□□ 2.41
SHMT1-203ENST00000354098 MAP2P11137 1827 aaKnown RBP30.09■■■□□ 2.41
SHMT1-203ENST00000354098 STRN4Q9NRL3 753 aa30.09■■■□□ 2.41
SHMT1-203ENST00000354098 RGPD5Q99666 1765 aa30.08■■■□□ 2.41
SHMT1-203ENST00000354098 ZNF772Q68DY9 489 aaPredicted RBP30.07■■■□□ 2.41
SHMT1-203ENST00000354098 NRAPQ86VF7 1730 aa30.07■■■□□ 2.4
SHMT1-203ENST00000354098 COL5A2P05997 1499 aaPredicted RBP30.06■■■□□ 2.4
SHMT1-203ENST00000354098 EVA1CP58658 441 aa30.06■■■□□ 2.4
SHMT1-203ENST00000354098 HSP90AB2PQ58FF8 381 aa30.06■■■□□ 2.4
SHMT1-203ENST00000354098 ABCC6O95255 1503 aa30.06■■■□□ 2.4
SHMT1-203ENST00000354098 PARD3Q8TEW0 1356 aa30.05■■■□□ 2.4
SHMT1-203ENST00000354098 RTL1A6NKG5 1358 aa30.05■■■□□ 2.4
SHMT1-203ENST00000354098 FLT4P35916 1363 aa30.05■■■□□ 2.4
SHMT1-203ENST00000354098 QTRT2Q9H974 415 aaKnown RBP30.04■■■□□ 2.4
SHMT1-203ENST00000354098 KIF24Q5T7B8 1368 aa30.03■■■□□ 2.4
SHMT1-203ENST00000354098 MTHFSP49914 203 aa30.03■■■□□ 2.4
SHMT1-203ENST00000354098 LARP1Q6PKG0 1096 aaKnown RBP30.03■■■□□ 2.4
SHMT1-203ENST00000354098 POTEAQ6S8J7 498 aa30.03■■■□□ 2.4
SHMT1-203ENST00000354098 LTV1Q96GA3 475 aaPredicted RBP30.03■■■□□ 2.4
SHMT1-203ENST00000354098 BLMP54132 1417 aaPredicted RBP30.03■■■□□ 2.4
SHMT1-203ENST00000354098 SMG6Q86US8 1419 aaKnown RBP30.02■■■□□ 2.4
SHMT1-203ENST00000354098 TNKS1BP1Q9C0C2 1729 aaKnown RBP30.02■■■□□ 2.4
SHMT1-203ENST00000354098 PPP2R1AP30153 589 aa30.01■■■□□ 2.4
SHMT1-203ENST00000354098 ANKRD24Q8TF21 1146 aa30.01■■■□□ 2.4
SHMT1-203ENST00000354098 TRPC5Q9UL62 973 aaPredicted RBP30.01■■■□□ 2.4
SHMT1-203ENST00000354098 ATRNO75882 1429 aa30.01■■■□□ 2.39
SHMT1-203ENST00000354098 VPS72Q15906 364 aa30.01■■■□□ 2.39
SHMT1-203ENST00000354098 ERBB3P21860 1342 aa30■■■□□ 2.39
SHMT1-203ENST00000354098 INSRP06213 1382 aa30■■■□□ 2.39
SHMT1-203ENST00000354098 RALBP1Q15311 655 aa29.99■■■□□ 2.39
SHMT1-203ENST00000354098 CCDC9Q9Y3X0 531 aaKnown RBP29.99■■■□□ 2.39
SHMT1-203ENST00000354098 WDR17Q8IZU2 1322 aa29.99■■■□□ 2.39
SHMT1-203ENST00000354098 CSB-PGBD3P0DP91 1061 aa29.98■■■□□ 2.39
SHMT1-203ENST00000354098 PRKRIP1Q9H875 184 aaPredicted RBP29.98■■■□□ 2.39
SHMT1-203ENST00000354098 TOM1L2Q6ZVM7 507 aa29.95■■■□□ 2.39
SHMT1-203ENST00000354098 GJD4Q96KN9 370 aaPredicted RBP29.95■■■□□ 2.39
SHMT1-203ENST00000354098 USP35Q9P2H5 1018 aa29.95■■■□□ 2.39
SHMT1-203ENST00000354098 CDK12Q9NYV4 1490 aaPredicted RBP29.95■■■□□ 2.39
SHMT1-203ENST00000354098 SPATA31A5Q5VU36 1347 aa29.94■■■□□ 2.38
SHMT1-203ENST00000354098 SPATA31A7Q8IWB4 1347 aa29.94■■■□□ 2.38
SHMT1-203ENST00000354098 CRB1P82279 1406 aa29.93■■■□□ 2.38
SHMT1-203ENST00000354098 NLRP2Q9NX02 1062 aa29.92■■■□□ 2.38
SHMT1-203ENST00000354098 SPATA31A1Q5TZJ5 1347 aa29.92■■■□□ 2.38
SHMT1-203ENST00000354098 EIF4A2Q14240 407 aaKnown RBP29.91■■■□□ 2.38
SHMT1-203ENST00000354098 GLI3P10071 1580 aa29.9■■■□□ 2.38
SHMT1-203ENST00000354098 RBM6P78332 1123 aaKnown RBP29.89■■■□□ 2.38
SHMT1-203ENST00000354098 MYBBP1AQ9BQG0 1328 aaKnown RBP29.88■■■□□ 2.37
SHMT1-203ENST00000354098 RXRBP28702 533 aa29.88■■■□□ 2.37
SHMT1-203ENST00000354098 NBPF6Q5VWK0 638 aa29.88■■■□□ 2.37
SHMT1-203ENST00000354098 NBPF4Q96M43 638 aa29.88■■■□□ 2.37
SHMT1-203ENST00000354098 CARD10Q9BWT7 1032 aa29.88■■■□□ 2.37
SHMT1-203ENST00000354098 ANP32CO43423 234 aa29.88■■■□□ 2.37
SHMT1-203ENST00000354098 RGPD2P0DJD1 1756 aa29.86■■■□□ 2.37
SHMT1-203ENST00000354098 FAM98CQ17RN3 349 aaKnown RBP29.85■■■□□ 2.37
SHMT1-203ENST00000354098 TCP11L2Q8N4U5 519 aa29.85■■■□□ 2.37
SHMT1-203ENST00000354098 USHBP1Q8N6Y0 703 aa29.85■■■□□ 2.37
SHMT1-203ENST00000354098 IL13P35225 146 aa29.85■■■□□ 2.37
SHMT1-203ENST00000354098 COL3A1P02461 1466 aaPredicted RBP29.85■■■□□ 2.37
SHMT1-203ENST00000354098 EYA1Q99502 592 aa29.84■■■□□ 2.37
SHMT1-203ENST00000354098 FAM208AQ9UK61 1670 aaKnown RBP29.83■■■□□ 2.37
SHMT1-203ENST00000354098 DIAPH1O60610 1272 aaKnown RBP29.82■■■□□ 2.36
SHMT1-203ENST00000354098 CFAP53Q96M91 514 aa29.82■■■□□ 2.36
SHMT1-203ENST00000354098 DIEXFQ68CQ4 756 aaKnown RBP29.81■■■□□ 2.36
SHMT1-203ENST00000354098 THRAP3Q9Y2W1 955 aaKnown RBP29.81■■■□□ 2.36
SHMT1-203ENST00000354098 BARGINQ6ZT62 677 aa29.8■■■□□ 2.36
SHMT1-203ENST00000354098 ONECUT3O60422 494 aaPredicted RBP29.79■■■□□ 2.36
SHMT1-203ENST00000354098 IGSF1Q8N6C5 1336 aa29.77■■■□□ 2.36
SHMT1-203ENST00000354098 SEPT12Q8IYM1 358 aa29.76■■■□□ 2.35
SHMT1-203ENST00000354098 RGS12O14924 1447 aa29.75■■■□□ 2.35
SHMT1-203ENST00000354098 A0A0G2JS52 829 aa29.75■■■□□ 2.35
SHMT1-203ENST00000354098 MYT1Q01538 1121 aa29.75■■■□□ 2.35
SHMT1-203ENST00000354098 DISP2A7MBM2 1401 aa29.74■■■□□ 2.35
SHMT1-203ENST00000354098 NCAPD2Q15021 1401 aa29.74■■■□□ 2.35
SHMT1-203ENST00000354098 RGPD1P0DJD0 1748 aa29.73■■■□□ 2.35
SHMT1-203ENST00000354098 U2SURPO15042 1029 aaKnown RBP29.73■■■□□ 2.35
SHMT1-203ENST00000354098 AEBP1Q8IUX7 1158 aa29.73■■■□□ 2.35
SHMT1-203ENST00000354098 IL2RBP14784 551 aa29.72■■■□□ 2.35
SHMT1-203ENST00000354098 CCDC184Q52MB2 194 aa29.72■■■□□ 2.35
SHMT1-203ENST00000354098 THSD7AQ9UPZ6 1657 aa29.72■■■□□ 2.35
SHMT1-203ENST00000354098 SULT6B1Q6IMI4 303 aa29.71■■■□□ 2.35
SHMT1-203ENST00000354098 WNK3Q9BYP7 1800 aa29.7■■■□□ 2.35
SHMT1-203ENST00000354098 MEGF6O75095 1541 aa29.69■■■□□ 2.34
SHMT1-203ENST00000354098 HMOX1P09601 288 aa29.69■■■□□ 2.34
SHMT1-203ENST00000354098 NUDCQ9Y266 331 aa29.69■■■□□ 2.34
SHMT1-203ENST00000354098 RAPGEF4Q8WZA2 1011 aa29.68■■■□□ 2.34
SHMT1-203ENST00000354098 CDCA7Q9BWT1 371 aaPredicted RBP29.68■■■□□ 2.34
SHMT1-203ENST00000354098 ILDR2Q71H61 639 aa29.66■■■□□ 2.34
SHMT1-203ENST00000354098 KDRP35968 1356 aa29.65■■■□□ 2.34
SHMT1-203ENST00000354098 U2AF1L5P0DN76 240 aaPredicted RBP29.65■■■□□ 2.34
SHMT1-203ENST00000354098 U2AF1Q01081 240 aaKnown RBP eCLIP29.65■■■□□ 2.34
SHMT1-203ENST00000354098 PARP4Q9UKK3 1724 aaKnown RBP29.64■■■□□ 2.34
SHMT1-203ENST00000354098 TATP17735 454 aaPredicted RBP29.64■■■□□ 2.34
SHMT1-203ENST00000354098 DDB1Q16531 1140 aa29.64■■■□□ 2.34
SHMT1-203ENST00000354098 LRRC37A3O60309 1634 aa29.63■■■□□ 2.33
SHMT1-203ENST00000354098 OVOS2A0A0G2JMS6 1433 aa29.63■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms