RNA–Protein interactions for RNA: ENST00000306324.3

HOXD4-201, Transcript of homeobox D4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD4, Length 1,464 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4-201ENST00000306324 NPC1L1Q9UHC9 1359 aa30.45■■■□□ 2.47
HOXD4-201ENST00000306324 MAP3K19Q56UN5 1328 aa30.44■■■□□ 2.46
HOXD4-201ENST00000306324 UNC5CLQ8IV45 518 aa30.44■■■□□ 2.46
HOXD4-201ENST00000306324 ABCC6O95255 1503 aa30.41■■■□□ 2.46
HOXD4-201ENST00000306324 AMPHP49418 695 aa30.41■■■□□ 2.46
HOXD4-201ENST00000306324 STRN4Q9NRL3 753 aa30.41■■■□□ 2.46
HOXD4-201ENST00000306324 AXIN2Q9Y2T1 843 aa30.41■■■□□ 2.46
HOXD4-201ENST00000306324 EVA1CP58658 441 aa30.39■■■□□ 2.46
HOXD4-201ENST00000306324 PEAK1Q9H792 1746 aa30.39■■■□□ 2.45
HOXD4-201ENST00000306324 QTRT2Q9H974 415 aaKnown RBP30.38■■■□□ 2.45
HOXD4-201ENST00000306324 PPM1GO15355 546 aaPredicted RBP30.38■■■□□ 2.45
HOXD4-201ENST00000306324 TRPC5Q9UL62 973 aaPredicted RBP30.38■■■□□ 2.45
HOXD4-201ENST00000306324 EMILIN1Q9Y6C2 1016 aa30.38■■■□□ 2.45
HOXD4-201ENST00000306324 COL5A2P05997 1499 aaPredicted RBP30.37■■■□□ 2.45
HOXD4-201ENST00000306324 IP6K1Q92551 441 aa30.37■■■□□ 2.45
HOXD4-201ENST00000306324 POTEAQ6S8J7 498 aa30.36■■■□□ 2.45
HOXD4-201ENST00000306324 CCDC9Q9Y3X0 531 aaKnown RBP30.36■■■□□ 2.45
HOXD4-201ENST00000306324 HOXC9P31274 260 aa30.35■■■□□ 2.45
HOXD4-201ENST00000306324 POLKQ9UBT6 870 aa30.35■■■□□ 2.45
HOXD4-201ENST00000306324 ATRNO75882 1429 aa30.35■■■□□ 2.45
HOXD4-201ENST00000306324 RTL1A6NKG5 1358 aa30.35■■■□□ 2.45
HOXD4-201ENST00000306324 BLMP54132 1417 aaPredicted RBP30.33■■■□□ 2.45
HOXD4-201ENST00000306324 FLT4P35916 1363 aa30.33■■■□□ 2.45
HOXD4-201ENST00000306324 VPS72Q15906 364 aa30.32■■■□□ 2.44
HOXD4-201ENST00000306324 KIF24Q5T7B8 1368 aa30.31■■■□□ 2.44
HOXD4-201ENST00000306324 CSB-PGBD3P0DP91 1061 aa30.31■■■□□ 2.44
HOXD4-201ENST00000306324 LARP1Q6PKG0 1096 aaKnown RBP30.31■■■□□ 2.44
HOXD4-201ENST00000306324 LTV1Q96GA3 475 aaPredicted RBP30.3■■■□□ 2.44
HOXD4-201ENST00000306324 HSP90AB2PQ58FF8 381 aa30.29■■■□□ 2.44
HOXD4-201ENST00000306324 ANKRD24Q8TF21 1146 aa30.29■■■□□ 2.44
HOXD4-201ENST00000306324 ERBB3P21860 1342 aa30.29■■■□□ 2.44
HOXD4-201ENST00000306324 WDR17Q8IZU2 1322 aa30.29■■■□□ 2.44
HOXD4-201ENST00000306324 GJD4Q96KN9 370 aaPredicted RBP30.28■■■□□ 2.44
HOXD4-201ENST00000306324 RGPD2P0DJD1 1756 aa30.28■■■□□ 2.44
HOXD4-201ENST00000306324 GLI3P10071 1580 aa30.27■■■□□ 2.44
HOXD4-201ENST00000306324 SMG6Q86US8 1419 aaKnown RBP30.26■■■□□ 2.44
HOXD4-201ENST00000306324 RXRBP28702 533 aa30.26■■■□□ 2.44
HOXD4-201ENST00000306324 TOM1L2Q6ZVM7 507 aa30.26■■■□□ 2.44
HOXD4-201ENST00000306324 USP35Q9P2H5 1018 aa30.26■■■□□ 2.44
HOXD4-201ENST00000306324 FAM208AQ9UK61 1670 aaKnown RBP30.26■■■□□ 2.43
HOXD4-201ENST00000306324 INSRP06213 1382 aa30.26■■■□□ 2.43
HOXD4-201ENST00000306324 CRB1P82279 1406 aa30.26■■■□□ 2.43
HOXD4-201ENST00000306324 RBM6P78332 1123 aaKnown RBP30.25■■■□□ 2.43
HOXD4-201ENST00000306324 SPATA31A5Q5VU36 1347 aa30.25■■■□□ 2.43
HOXD4-201ENST00000306324 SPATA31A7Q8IWB4 1347 aa30.25■■■□□ 2.43
HOXD4-201ENST00000306324 MTHFSP49914 203 aa30.24■■■□□ 2.43
HOXD4-201ENST00000306324 PARD3Q8TEW0 1356 aa30.23■■■□□ 2.43
HOXD4-201ENST00000306324 SPATA31A1Q5TZJ5 1347 aa30.23■■■□□ 2.43
HOXD4-201ENST00000306324 CDK12Q9NYV4 1490 aaPredicted RBP30.22■■■□□ 2.43
HOXD4-201ENST00000306324 NLRP2Q9NX02 1062 aa30.21■■■□□ 2.43
HOXD4-201ENST00000306324 PPP2R1AP30153 589 aa30.19■■■□□ 2.42
HOXD4-201ENST00000306324 RALBP1Q15311 655 aa30.19■■■□□ 2.42
HOXD4-201ENST00000306324 CARD10Q9BWT7 1032 aa30.18■■■□□ 2.42
HOXD4-201ENST00000306324 FAM98CQ17RN3 349 aaKnown RBP30.17■■■□□ 2.42
HOXD4-201ENST00000306324 TCP11L2Q8N4U5 519 aa30.17■■■□□ 2.42
HOXD4-201ENST00000306324 WNK3Q9BYP7 1800 aa30.16■■■□□ 2.42
HOXD4-201ENST00000306324 A0A0G2JS52 829 aa30.14■■■□□ 2.42
HOXD4-201ENST00000306324 MYT1Q01538 1121 aa30.14■■■□□ 2.42
HOXD4-201ENST00000306324 EIF4A2Q14240 407 aaKnown RBP30.14■■■□□ 2.42
HOXD4-201ENST00000306324 THRAP3Q9Y2W1 955 aaKnown RBP30.13■■■□□ 2.41
HOXD4-201ENST00000306324 PRKRIP1Q9H875 184 aaPredicted RBP30.12■■■□□ 2.41
HOXD4-201ENST00000306324 NBPF6Q5VWK0 638 aa30.12■■■□□ 2.41
HOXD4-201ENST00000306324 NBPF4Q96M43 638 aa30.12■■■□□ 2.41
HOXD4-201ENST00000306324 RGS12O14924 1447 aa30.11■■■□□ 2.41
HOXD4-201ENST00000306324 BRWD3Q6RI45 1802 aa30.1■■■□□ 2.41
HOXD4-201ENST00000306324 BARGINQ6ZT62 677 aa30.1■■■□□ 2.41
HOXD4-201ENST00000306324 USHBP1Q8N6Y0 703 aa30.1■■■□□ 2.41
HOXD4-201ENST00000306324 CFAP53Q96M91 514 aa30.09■■■□□ 2.41
HOXD4-201ENST00000306324 THSD7AQ9UPZ6 1657 aa30.09■■■□□ 2.41
HOXD4-201ENST00000306324 MYBBP1AQ9BQG0 1328 aaKnown RBP30.08■■■□□ 2.41
HOXD4-201ENST00000306324 ONECUT3O60422 494 aaPredicted RBP30.07■■■□□ 2.4
HOXD4-201ENST00000306324 SEPT12Q8IYM1 358 aa30.07■■■□□ 2.4
HOXD4-201ENST00000306324 EYA1Q99502 592 aa30.06■■■□□ 2.4
HOXD4-201ENST00000306324 COL3A1P02461 1466 aaPredicted RBP30.06■■■□□ 2.4
HOXD4-201ENST00000306324 ANP32CO43423 234 aa30.06■■■□□ 2.4
HOXD4-201ENST00000306324 DIAPH1O60610 1272 aaKnown RBP30.06■■■□□ 2.4
HOXD4-201ENST00000306324 PARP4Q9UKK3 1724 aaKnown RBP30.05■■■□□ 2.4
HOXD4-201ENST00000306324 IL13P35225 146 aa30.05■■■□□ 2.4
HOXD4-201ENST00000306324 ILDR2Q71H61 639 aa30.04■■■□□ 2.4
HOXD4-201ENST00000306324 RGPD1P0DJD0 1748 aa30.04■■■□□ 2.4
HOXD4-201ENST00000306324 IL2RBP14784 551 aa30.02■■■□□ 2.4
HOXD4-201ENST00000306324 DISP2A7MBM2 1401 aa30.02■■■□□ 2.4
HOXD4-201ENST00000306324 CDCA7Q9BWT1 371 aaPredicted RBP30.01■■■□□ 2.4
HOXD4-201ENST00000306324 LRRC37A3O60309 1634 aa30■■■□□ 2.39
HOXD4-201ENST00000306324 IGSF1Q8N6C5 1336 aa30■■■□□ 2.39
HOXD4-201ENST00000306324 RAPGEF4Q8WZA2 1011 aa29.99■■■□□ 2.39
HOXD4-201ENST00000306324 NCAPD2Q15021 1401 aa29.99■■■□□ 2.39
HOXD4-201ENST00000306324 MEGF6O75095 1541 aa29.98■■■□□ 2.39
HOXD4-201ENST00000306324 U2SURPO15042 1029 aaKnown RBP29.97■■■□□ 2.39
HOXD4-201ENST00000306324 DDB1Q16531 1140 aa29.97■■■□□ 2.39
HOXD4-201ENST00000306324 NUDCQ9Y266 331 aa29.95■■■□□ 2.39
HOXD4-201ENST00000306324 SULT6B1Q6IMI4 303 aa29.94■■■□□ 2.38
HOXD4-201ENST00000306324 EXOC5O00471 708 aa29.93■■■□□ 2.38
HOXD4-201ENST00000306324 TATP17735 454 aaPredicted RBP29.93■■■□□ 2.38
HOXD4-201ENST00000306324 PDE3BQ13370 1112 aa29.93■■■□□ 2.38
HOXD4-201ENST00000306324 KRT27Q7Z3Y8 459 aa29.93■■■□□ 2.38
HOXD4-201ENST00000306324 AEBP1Q8IUX7 1158 aa29.93■■■□□ 2.38
HOXD4-201ENST00000306324 EP400Q96L91 3159 aa29.93■■■□□ 2.38
HOXD4-201ENST00000306324 HMOX1P09601 288 aa29.92■■■□□ 2.38
HOXD4-201ENST00000306324 OVOS2A0A0G2JMS6 1433 aa29.92■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms