RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 RACK1P63244 317 aaKnown RBP26■■□□□ 1.75
TRIM28-204ENST00000594806 RPS6KA1Q15418 735 aa26■■□□□ 1.75
TRIM28-204ENST00000594806 TTC13Q8NBP0 860 aa26■■□□□ 1.75
TRIM28-204ENST00000594806 VAT1Q99536 393 aa26■■□□□ 1.75
TRIM28-204ENST00000594806 SEMA3CQ99985 751 aa26■■□□□ 1.75
TRIM28-204ENST00000594806 FERMT1Q9BQL6 677 aa26■■□□□ 1.75
TRIM28-204ENST00000594806 ORAI3Q9BRQ5 295 aa26■■□□□ 1.75
TRIM28-204ENST00000594806 CAPN10Q9HC96 672 aa26■■□□□ 1.75
TRIM28-204ENST00000594806 A0A1W2PQU0 124 aa25.99■■□□□ 1.75
TRIM28-204ENST00000594806 UPK3BL1B0FP48 263 aa25.99■■□□□ 1.75
TRIM28-204ENST00000594806 UPK3BL2E5RIL1 263 aa25.99■■□□□ 1.75
TRIM28-204ENST00000594806 NEMP1O14524 444 aa25.99■■□□□ 1.75
TRIM28-204ENST00000594806 ABL2P42684 1182 aa25.99■■□□□ 1.75
TRIM28-204ENST00000594806 AFF3P51826 1226 aaKnown RBP25.99■■□□□ 1.75
TRIM28-204ENST00000594806 PPP2CBP62714 309 aa25.99■■□□□ 1.75
TRIM28-204ENST00000594806 PPP2CAP67775 309 aa25.99■■□□□ 1.75
TRIM28-204ENST00000594806 ARHGAP8P85298 464 aa25.99■■□□□ 1.75
TRIM28-204ENST00000594806 NOMO1Q15155 1222 aa25.99■■□□□ 1.75
TRIM28-204ENST00000594806 TEAD4Q15561 434 aa25.99■■□□□ 1.75
TRIM28-204ENST00000594806 CCDC6Q16204 474 aa25.99■■□□□ 1.75
TRIM28-204ENST00000594806 ERAP2Q6P179 960 aa25.99■■□□□ 1.75
TRIM28-204ENST00000594806 ZCCHC9Q8N567 271 aaKnown RBP25.99■■□□□ 1.75
TRIM28-204ENST00000594806 CFIP05156 583 aa25.98■■□□□ 1.75
TRIM28-204ENST00000594806 HLA-DQB2P05538 268 aa25.98■■□□□ 1.75
TRIM28-204ENST00000594806 SYPP08247 313 aa25.98■■□□□ 1.75
TRIM28-204ENST00000594806 CA4P22748 312 aa25.98■■□□□ 1.75
TRIM28-204ENST00000594806 GRIA4P48058 902 aa25.98■■□□□ 1.75
TRIM28-204ENST00000594806 TMEM259Q4ZIN3 620 aa25.98■■□□□ 1.75
TRIM28-204ENST00000594806 TEX44Q53QW1 395 aa25.98■■□□□ 1.75
TRIM28-204ENST00000594806 SEL1L2Q5TEA6 688 aa25.98■■□□□ 1.75
TRIM28-204ENST00000594806 KIAA2013Q8IYS2 634 aa25.98■■□□□ 1.75
TRIM28-204ENST00000594806 PAF1Q8N7H5 531 aa25.98■■□□□ 1.75
TRIM28-204ENST00000594806 LRRN4Q8WUT4 740 aa25.98■■□□□ 1.75
TRIM28-204ENST00000594806 ASB12Q8WXK4 309 aa25.98■■□□□ 1.75
TRIM28-204ENST00000594806 SKA1Q96BD8 255 aa25.98■■□□□ 1.75
TRIM28-204ENST00000594806 QKIQ96PU8 341 aaKnown RBP eCLIP25.98■■□□□ 1.75
TRIM28-204ENST00000594806 ZDHHC5Q9C0B5 715 aa25.98■■□□□ 1.75
TRIM28-204ENST00000594806 CARD9Q9H257 536 aa25.98■■□□□ 1.75
TRIM28-204ENST00000594806 DOCK9Q9BZ29 2069 aa25.98■■□□□ 1.75
TRIM28-204ENST00000594806 IRX4P78413 519 aa25.97■■□□□ 1.75
TRIM28-204ENST00000594806 ZBTB17Q13105 803 aa25.97■■□□□ 1.75
TRIM28-204ENST00000594806 ZNF211Q13398 564 aaPredicted RBP25.97■■□□□ 1.75
TRIM28-204ENST00000594806 SF3A2Q15428 464 aaKnown RBP25.97■■□□□ 1.75
TRIM28-204ENST00000594806 TMEM52BQ4KMG9 183 aa25.97■■□□□ 1.75
TRIM28-204ENST00000594806 AASDHQ4L235 1098 aaPredicted RBP25.97■■□□□ 1.75
TRIM28-204ENST00000594806 SLC45A4Q5BKX6 768 aa25.97■■□□□ 1.75
TRIM28-204ENST00000594806 NAPEPLDQ6IQ20 393 aa25.97■■□□□ 1.75
TRIM28-204ENST00000594806 ZC3H18Q86VM9 953 aaKnown RBP25.97■■□□□ 1.75
TRIM28-204ENST00000594806 ARRDC2Q8TBH0 407 aa25.97■■□□□ 1.75
TRIM28-204ENST00000594806 ACTL9Q8TC94 416 aa25.97■■□□□ 1.75
TRIM28-204ENST00000594806 HAUS1Q96CS2 278 aa25.97■■□□□ 1.75
TRIM28-204ENST00000594806 SMOC1Q9H4F8 434 aa25.97■■□□□ 1.75
TRIM28-204ENST00000594806 TM9SF3Q9HD45 589 aa25.97■■□□□ 1.75
TRIM28-204ENST00000594806 PHTF1Q9UMS5 762 aa25.97■■□□□ 1.75
TRIM28-204ENST00000594806 TTLL3Q9Y4R7 772 aa25.97■■□□□ 1.75
TRIM28-204ENST00000594806 PCDHGC4Q9Y5F7 938 aa25.97■■□□□ 1.75
TRIM28-204ENST00000594806 CFAP69A5D8W1 941 aa25.96■■□□□ 1.75
TRIM28-204ENST00000594806 PATE3B3GLJ2 98 aa25.96■■□□□ 1.75
TRIM28-204ENST00000594806 PRAMEF26H0Y7S4 382 aa25.96■■□□□ 1.75
TRIM28-204ENST00000594806 RIOK3O14730 519 aaKnown RBP25.96■■□□□ 1.75
TRIM28-204ENST00000594806 GJB3O75712 270 aa25.96■■□□□ 1.75
TRIM28-204ENST00000594806 OTUD4Q01804 1114 aaKnown RBP25.96■■□□□ 1.75
TRIM28-204ENST00000594806 SLC14A2Q15849 920 aa25.96■■□□□ 1.75
TRIM28-204ENST00000594806 ZNF284Q2VY69 593 aa25.96■■□□□ 1.75
TRIM28-204ENST00000594806 ARMC12Q5T9G4 340 aa25.96■■□□□ 1.75
TRIM28-204ENST00000594806 REXO1L1PQ8IX06 675 aa25.96■■□□□ 1.75
TRIM28-204ENST00000594806 NDUFAF2Q8N183 169 aa25.96■■□□□ 1.75
TRIM28-204ENST00000594806 CNTD1Q8N815 330 aa25.96■■□□□ 1.75
TRIM28-204ENST00000594806 FAM174AQ8TBP5 190 aa25.96■■□□□ 1.75
TRIM28-204ENST00000594806 SERAC1Q96JX3 654 aa25.96■■□□□ 1.75
TRIM28-204ENST00000594806 NSMCE3Q96MG7 304 aa25.96■■□□□ 1.75
TRIM28-204ENST00000594806 HERPUD2Q9BSE4 406 aa25.96■■□□□ 1.75
TRIM28-204ENST00000594806 EBF2Q9HAK2 575 aa25.96■■□□□ 1.75
TRIM28-204ENST00000594806 SEPT10Q9P0V9 454 aa25.96■■□□□ 1.75
TRIM28-204ENST00000594806 ZFR2Q9UPR6 939 aaKnown RBP25.96■■□□□ 1.75
TRIM28-204ENST00000594806 ZNF292O60281 2723 aa25.96■■□□□ 1.75
TRIM28-204ENST00000594806 TTC24A2A3L6 582 aaPredicted RBP25.95■■□□□ 1.74
TRIM28-204ENST00000594806 H7C0C1 242 aa25.95■■□□□ 1.74
TRIM28-204ENST00000594806 PGLSO95336 258 aa25.95■■□□□ 1.74
TRIM28-204ENST00000594806 MSNP26038 577 aaKnown RBP25.95■■□□□ 1.74
TRIM28-204ENST00000594806 PTPN3P26045 913 aa25.95■■□□□ 1.74
TRIM28-204ENST00000594806 MAT2AP31153 395 aaKnown RBP25.95■■□□□ 1.74
TRIM28-204ENST00000594806 ATP5OP48047 213 aa25.95■■□□□ 1.74
TRIM28-204ENST00000594806 DSC2Q02487 901 aa25.95■■□□□ 1.74
TRIM28-204ENST00000594806 KLF1Q13351 362 aaPredicted RBP25.95■■□□□ 1.74
TRIM28-204ENST00000594806 AADACL2Q6P093 401 aa25.95■■□□□ 1.74
TRIM28-204ENST00000594806 CDKL3Q8IVW4 592 aaPredicted RBP25.95■■□□□ 1.74
TRIM28-204ENST00000594806 CXorf40AQ8TE69 158 aa25.95■■□□□ 1.74
TRIM28-204ENST00000594806 HTR3CQ8WXA8 447 aa25.95■■□□□ 1.74
TRIM28-204ENST00000594806 TEKT5Q96M29 485 aa25.95■■□□□ 1.74
TRIM28-204ENST00000594806 C1QTNF2Q9BXJ5 285 aa25.95■■□□□ 1.74
TRIM28-204ENST00000594806 SLC17A9Q9BYT1 436 aa25.95■■□□□ 1.74
TRIM28-204ENST00000594806 PCDH12Q9NPG4 1184 aa25.95■■□□□ 1.74
TRIM28-204ENST00000594806 RAI2Q9Y5P3 530 aa25.95■■□□□ 1.74
TRIM28-204ENST00000594806 DYNC1LI1Q9Y6G9 523 aaKnown RBP25.95■■□□□ 1.74
TRIM28-204ENST00000594806 PLXNA2O75051 1894 aa25.95■■□□□ 1.74
TRIM28-204ENST00000594806 LNP1A1A4G5 178 aa25.94■■□□□ 1.74
TRIM28-204ENST00000594806 ARHGAP33O14559 1287 aa25.94■■□□□ 1.74
TRIM28-204ENST00000594806 SPINT1O43278 529 aa25.94■■□□□ 1.74
TRIM28-204ENST00000594806 MAGEC1O60732 1142 aa25.94■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms