RNA–Protein interactions for RNA: ENST00000469717.5

TPM3-215, Transcript of tropomyosin 3, human

TSL 2

Gene TPM3, Length 4,041 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM3-215	ENST00000469717	WARS2	Q9UGM6	360 aa	Known RBP	8.01	□□□□□ -1.13
TPM3-215	ENST00000469717	TMEM114	B3SHH9	223 aa		8.01	□□□□□ -1.13
TPM3-215	ENST00000469717	ESRRB	O95718	433 aa		8.01	□□□□□ -1.13
TPM3-215	ENST00000469717	ITGB3	P05106	788 aa		8.01	□□□□□ -1.13
TPM3-215	ENST00000469717	POLB	P06746	335 aa		8.01	□□□□□ -1.13
TPM3-215	ENST00000469717	MYCLP1	P12525	358 aa	Predicted RBP	8.01	□□□□□ -1.13
TPM3-215	ENST00000469717	TKT	P29401	623 aa	Known RBP	8.01	□□□□□ -1.13
TPM3-215	ENST00000469717	SHMT2	P34897	504 aa		8.01	□□□□□ -1.13
TPM3-215	ENST00000469717	CYBRD1	Q53TN4	286 aa		8.01	□□□□□ -1.13
TPM3-215	ENST00000469717	EEF1DP3	Q658K8	133 aa		8.01	□□□□□ -1.13
TPM3-215	ENST00000469717	RNF135	Q8IUD6	432 aa		8.01	□□□□□ -1.13
TPM3-215	ENST00000469717	ANKRD13A	Q8IZ07	590 aa		8.01	□□□□□ -1.13
TPM3-215	ENST00000469717	CENPL	Q8N0S6	344 aa	Predicted RBP	8.01	□□□□□ -1.13
TPM3-215	ENST00000469717	ANKFN1	Q8N957	763 aa		8.01	□□□□□ -1.13
TPM3-215	ENST00000469717	TXNDC5	Q8NBS9	432 aa	Known RBP	8.01	□□□□□ -1.13
TPM3-215	ENST00000469717	ZC3H15	Q8WU90	426 aa	Known RBP	8.01	□□□□□ -1.13
TPM3-215	ENST00000469717	P2RY11	Q96G91	374 aa		8.01	□□□□□ -1.13
TPM3-215	ENST00000469717	CSPG4P5	Q96PW8	444 aa		8.01	□□□□□ -1.13
TPM3-215	ENST00000469717	KCTD15	Q96SI1	283 aa	Predicted RBP	8.01	□□□□□ -1.13
TPM3-215	ENST00000469717	CPNE1	Q99829	537 aa		8.01	□□□□□ -1.13
TPM3-215	ENST00000469717	ALOXE3	Q9BYJ1	711 aa		8.01	□□□□□ -1.13
TPM3-215	ENST00000469717	EXD2	Q9NVH0	621 aa		8.01	□□□□□ -1.13
TPM3-215	ENST00000469717	ATAD3A	Q9NVI7	634 aa		8.01	□□□□□ -1.13
TPM3-215	ENST00000469717	MTPAP	Q9NVV4	582 aa	Known RBP eCLIP	8.01	□□□□□ -1.13
TPM3-215	ENST00000469717	TSPAN16	Q9UKR8	245 aa		8.01	□□□□□ -1.13
TPM3-215	ENST00000469717	PCDHGA3	Q9Y5H0	932 aa		8.01	□□□□□ -1.13
TPM3-215	ENST00000469717		A0A0A0MRY4	1105 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	ZCWPW2	A0A1B0GU75	182 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	ACOX3	O15254	700 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	SNAP91	O60641	907 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	RSL1D1	O76021	490 aa	Known RBP	8	□□□□□ -1.13
TPM3-215	ENST00000469717	NR3C2	P08235	984 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	BDNF	P23560	247 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	SPR	P35270	261 aa	Predicted RBP	8	□□□□□ -1.13
TPM3-215	ENST00000469717	PCYT1A	P49585	367 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	PITX1	P78337	314 aa	Predicted RBP	8	□□□□□ -1.13
TPM3-215	ENST00000469717	SLC13A2	Q13183	592 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	RFTN1	Q14699	578 aa	Predicted RBP	8	□□□□□ -1.13
TPM3-215	ENST00000469717	ANKRD34A	Q69YU3	496 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	SLFN12L	Q6IEE8	588 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	NEPRO	Q6NW34	567 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	NIPA1	Q7RTP0	329 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	FAM131B	Q86XD5	332 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	CEP97	Q8IW35	865 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	DNAAF3	Q8N9W5	541 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	SMG8	Q8ND04	991 aa	Known RBP	8	□□□□□ -1.13
TPM3-215	ENST00000469717	OR2T34	Q8NGX1	318 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	OR2T3	Q8NH03	318 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	ADAMTS16	Q8TE57	1224 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	TRPC4AP	Q8TEL6	797 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	CAPSL	Q8WWF8	208 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	HDAC10	Q969S8	669 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	SPATA13	Q96N96	652 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	MUS81	Q96NY9	551 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	EIF2A	Q9BY44	585 aa	Known RBP	8	□□□□□ -1.13
TPM3-215	ENST00000469717	PORCN	Q9H237	461 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	SMARCAD1	Q9H4L7	1026 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	PTPRH	Q9HD43	1115 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	JPH1	Q9HDC5	661 aa	Predicted RBP	8	□□□□□ -1.13
TPM3-215	ENST00000469717	ADARB2	Q9NS39	739 aa	Known RBP	8	□□□□□ -1.13
TPM3-215	ENST00000469717	CROT	Q9UKG9	612 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	MICAL3	Q7RTP6	2002 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717		H0YJX3	145 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	ZNF701	M0R085	212 aa	Predicted RBP	8	□□□□□ -1.13
TPM3-215	ENST00000469717	AURKA	O14965	403 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	PFKM	P08237	780 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	BMP2	P12643	396 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	MZF1	P28698	734 aa	Predicted RBP	8	□□□□□ -1.13
TPM3-215	ENST00000469717	GARS	P41250	739 aa	Known RBP	8	□□□□□ -1.13
TPM3-215	ENST00000469717	MAGEA12	P43365	314 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	PRKAA1	Q13131	559 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	USP10	Q14694	798 aa	Known RBP	8	□□□□□ -1.13
TPM3-215	ENST00000469717	TAF1C	Q15572	869 aa	Predicted RBP	8	□□□□□ -1.13
TPM3-215	ENST00000469717	IMPG1	Q17R60	797 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	ZNF667	Q5HYK9	610 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	XAF1	Q6GPH4	301 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	ITIH5	Q86UX2	942 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	MFSD6L	Q8IWD5	586 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	DENND6A	Q8IWF6	608 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	PEX5L	Q8IYB4	626 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	ZNF567	Q8N184	647 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	C1orf127	Q8N9H9	656 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	OR13F1	Q8NGS4	319 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	SPPL2B	Q8TCT7	592 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	PBXIP1	Q96AQ6	731 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	QKI	Q96PU8	341 aa	Known RBP eCLIP	8	□□□□□ -1.13	8e-8	■■■■■ 32.5
TPM3-215	ENST00000469717	UHRF1	Q96T88	793 aa	Predicted RBP	8	□□□□□ -1.13
TPM3-215	ENST00000469717	C1QTNF1	Q9BXJ1	281 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	ADNP	Q9H2P0	1102 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	ITGB1BP2	Q9UKP3	347 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	CCL15-CCL14	A0A0B4J2E2	113 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	DHRS12	A0PJE2	317 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	SLC35E2B	P0CK96	405 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	FSHR	P23945	695 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	SDC4	P31431	198 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	IFITM2	Q01629	132 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	PPP1R8	Q12972	351 aa	Known RBP	8	□□□□□ -1.13
TPM3-215	ENST00000469717	CTBP1	Q13363	440 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	CCL15	Q16663	113 aa		8	□□□□□ -1.13
TPM3-215	ENST00000469717	GRTP1	Q5TC63	336 aa		8	□□□□□ -1.13

Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms