RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 ATP10AO60312 1499 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 KPNA3O00505 521 aaPredicted RBP14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 SUV39H1O43463 412 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 SASH3O75995 380 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 NAMPTP43490 491 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 UTS2BQ765I0 119 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 C12orf56Q8IXR9 622 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 CHST13Q8NET6 341 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 FCRL4Q96PJ5 515 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 ORAI2Q96SN7 254 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 CDHR2Q9BYE9 1310 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 HSDL2Q6YN16 418 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 METTL3Q86U44 580 aaKnown RBP14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 ZZZ3Q8IYH5 903 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 FAM13CQ8NE31 585 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 ELMO1Q92556 727 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 C1GALT1C1Q96EU7 318 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 GORASP1Q9BQQ3 440 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 PRR12Q9ULL5 1215 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 PHF24Q9UPV7 400 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 KAT7O95251 611 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 PSMG1O95456 288 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 ARCN1P48444 511 aaKnown RBP14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 TMBIM6P55061 237 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 ZNF470Q6ECI4 717 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 ARCQ7LC44 396 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 ZNF227Q86WZ6 799 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 RIT2Q99578 217 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 ENY2Q9NPA8 101 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 M0R129 80 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 PDE2AO00408 941 aaPredicted RBP14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 PAX7P23759 505 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 MPPE1Q53F39 396 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 SLCO6A1Q86UG4 719 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 CAVIN3Q969G5 261 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 MTMR10Q9NXD2 777 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 ARHGEF40Q8TER5 1519 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 PLEKP08567 350 aaPredicted RBP14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 HMGCS2P54868 508 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 OGFRL1Q5TC84 451 aaPredicted RBP14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 FRMD7Q6ZUT3 714 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 TBX4P57082 545 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 ZNF730Q6ZMV8 503 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 NKAPQ8N5F7 415 aaKnown RBP14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 LENG9Q96B70 501 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 C16orf58Q96GQ5 468 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 VAT1Q99536 393 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 ALDH8A1Q9H2A2 487 aaPredicted RBP14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 H3BNX3 289 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 TFPIP10646 304 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 RABL6Q3YEC7 729 aaPredicted RBP14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 SGMS1Q86VZ5 419 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 TBC1D10CQ8IV04 446 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 GPRC5AQ8NFJ5 357 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 ERGIC2Q96RQ1 377 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 SQORQ9Y6N5 450 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 RIIAD1A6NNX1 92 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 NMT2O60551 498 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 RPA1P27694 616 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 GNALP38405 381 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 LSM3P62310 102 aaKnown RBP14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 RPP38P78345 283 aaKnown RBP14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 DEFA5Q01523 94 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 TCP10LQ8TDR4 215 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 SERPINB11Q96P15 392 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 ITGA11Q9UKX5 1188 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 MYMKA6NI61 221 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 TTPAP49638 278 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 GPR107Q5VW38 600 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 KLHL35Q6PF15 583 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 OR2L8Q8NGY9 312 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 C15orf40Q8WUR7 153 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 APBA2Q99767 749 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 PRELID1Q9Y255 219 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 KDM5CP41229 1560 aa14.01□□□□□ -0.17
CCDC88A-201ENST00000263630 PDCD5O14737 125 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 SCN2BO60939 215 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 IDO1P14902 403 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 PTPN9P43378 593 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 ZNF484Q5JVG2 852 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 ACOT1Q86TX2 421 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 CDYL2Q8N8U2 506 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 NAT14Q8WUY8 206 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 ATXN3LQ9H3M9 355 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 TTC7BQ86TV6 843 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 CXorf40BQ96DE9 158 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 IDI2Q9BXS1 227 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 GGA2Q9UJY4 613 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 ACTL7BQ9Y614 415 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 ATP7BP35670 1465 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 POLR1AO95602 1720 aaPredicted RBP14□□□□□ -0.17
CCDC88A-201ENST00000263630 ALADP13716 330 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 FIP1L1Q6UN15 594 aaKnown RBP14□□□□□ -0.17
CCDC88A-201ENST00000263630 SLC34A3Q8N130 599 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 PRICKLE1Q96MT3 831 aaPredicted RBP14□□□□□ -0.17
CCDC88A-201ENST00000263630 TSPAN18Q96SJ8 248 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 NOL11Q9H8H0 719 aaKnown RBP14□□□□□ -0.17
CCDC88A-201ENST00000263630 TAS2R7Q9NYW3 318 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 KLQ9UEF7 1012 aa14□□□□□ -0.17
CCDC88A-201ENST00000263630 PRAMEF33A0A0G2JMD5 474 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms