RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 CCDC157Q569K6 752 aa19.35■□□□□ 0.69
CCDC28A-203ENST00000617445 ERMARDQ5T6L9 678 aa19.35■□□□□ 0.69
CCDC28A-203ENST00000617445 DHRS13Q6UX07 377 aa19.35■□□□□ 0.69
CCDC28A-203ENST00000617445 GDPD4Q6W3E5 623 aa19.35■□□□□ 0.69
CCDC28A-203ENST00000617445 KYAT3Q6YP21 454 aaKnown RBP19.35■□□□□ 0.69
CCDC28A-203ENST00000617445 GCNT7Q6ZNI0 430 aa19.35■□□□□ 0.69
CCDC28A-203ENST00000617445 Q6ZSR6 202 aa19.35■□□□□ 0.69
CCDC28A-203ENST00000617445 ZNF571Q7Z3V5 609 aaPredicted RBP19.35■□□□□ 0.69
CCDC28A-203ENST00000617445 DENND6BQ8NEG7 585 aa19.35■□□□□ 0.69
CCDC28A-203ENST00000617445 OR13H1Q8NG92 308 aa19.35■□□□□ 0.69
CCDC28A-203ENST00000617445 HCAR2Q8TDS4 363 aa19.35■□□□□ 0.69
CCDC28A-203ENST00000617445 HMCESQ96FZ2 354 aa19.35■□□□□ 0.69
CCDC28A-203ENST00000617445 MYOCQ99972 504 aa19.35■□□□□ 0.69
CCDC28A-203ENST00000617445 FUCA2Q9BTY2 467 aa19.35■□□□□ 0.69
CCDC28A-203ENST00000617445 CALN1Q9BXU9 219 aa19.35■□□□□ 0.69
CCDC28A-203ENST00000617445 CPEB1Q9BZB8 566 aaKnown RBP19.35■□□□□ 0.69
CCDC28A-203ENST00000617445 DKK3Q9UBP4 350 aa19.35■□□□□ 0.69
CCDC28A-203ENST00000617445 SCINQ9Y6U3 715 aa19.35■□□□□ 0.69
CCDC28A-203ENST00000617445 UGT2B4P06133 528 aa19.34■□□□□ 0.69
CCDC28A-203ENST00000617445 DGKAP23743 735 aa19.34■□□□□ 0.69
CCDC28A-203ENST00000617445 HNF1BP35680 557 aa19.34■□□□□ 0.69
CCDC28A-203ENST00000617445 RABIFP47224 123 aa19.34■□□□□ 0.69
CCDC28A-203ENST00000617445 ACADVLP49748 655 aa19.34■□□□□ 0.69
CCDC28A-203ENST00000617445 RHOAP61586 193 aa19.34■□□□□ 0.69
CCDC28A-203ENST00000617445 TTC7BQ86TV6 843 aa19.34■□□□□ 0.69
CCDC28A-203ENST00000617445 PDCD7Q8N8D1 485 aaKnown RBP19.34■□□□□ 0.69
CCDC28A-203ENST00000617445 OR6K2Q8NGY2 324 aa19.34■□□□□ 0.69
CCDC28A-203ENST00000617445 BMFQ96LC9 184 aa19.34■□□□□ 0.69
CCDC28A-203ENST00000617445 KLHL32Q96NJ5 620 aa19.34■□□□□ 0.69
CCDC28A-203ENST00000617445 NAP1L5Q96NT1 182 aaPredicted RBP19.34■□□□□ 0.69
CCDC28A-203ENST00000617445 MRPL47Q9HD33 250 aaKnown RBP19.34■□□□□ 0.69
CCDC28A-203ENST00000617445 FZD3Q9NPG1 666 aa19.34■□□□□ 0.69
CCDC28A-203ENST00000617445 GPR27Q9NS67 375 aa19.34■□□□□ 0.69
CCDC28A-203ENST00000617445 AP4E1Q9UPM8 1137 aa19.34■□□□□ 0.69
CCDC28A-203ENST00000617445 BZW2Q9Y6E2 419 aaKnown RBP19.34■□□□□ 0.69
CCDC28A-203ENST00000617445 URB1O60287 2271 aaKnown RBP19.34■□□□□ 0.69
CCDC28A-203ENST00000617445 NEMP2A6NFY4 417 aa19.33■□□□□ 0.68
CCDC28A-203ENST00000617445 IGLON5A6NGN9 336 aa19.33■□□□□ 0.68
CCDC28A-203ENST00000617445 FPGTO14772 594 aa19.33■□□□□ 0.68
CCDC28A-203ENST00000617445 AREL1O15033 823 aa19.33■□□□□ 0.68
CCDC28A-203ENST00000617445 PRPSAP2O60256 369 aa19.33■□□□□ 0.68
CCDC28A-203ENST00000617445 ACP1P24666 158 aa19.33■□□□□ 0.68
CCDC28A-203ENST00000617445 GKP32189 559 aa19.33■□□□□ 0.68
CCDC28A-203ENST00000617445 CLDN2P57739 230 aa19.33■□□□□ 0.68
CCDC28A-203ENST00000617445 HNRNPKP61978 463 aaKnown RBP eCLIP19.33■□□□□ 0.68
CCDC28A-203ENST00000617445 FGL2Q14314 439 aa19.33■□□□□ 0.68
CCDC28A-203ENST00000617445 ACAP1Q15027 740 aa19.33■□□□□ 0.68
CCDC28A-203ENST00000617445 ATXN7L2Q5T6C5 722 aaPredicted RBP19.33■□□□□ 0.68
CCDC28A-203ENST00000617445 LEKR1Q6ZMV7 388 aa19.33■□□□□ 0.68
CCDC28A-203ENST00000617445 PTAR1Q7Z6K3 402 aaPredicted RBP19.33■□□□□ 0.68
CCDC28A-203ENST00000617445 CACTIN-AS1Q8N1I8 211 aa19.33■□□□□ 0.68
CCDC28A-203ENST00000617445 SLC25A45Q8N413 288 aa19.33■□□□□ 0.68
CCDC28A-203ENST00000617445 IQCDQ96DY2 449 aa19.33■□□□□ 0.68
CCDC28A-203ENST00000617445 C1QTNF7Q9BXJ2 289 aa19.33■□□□□ 0.68
CCDC28A-203ENST00000617445 LRRC19Q9H756 370 aa19.33■□□□□ 0.68
CCDC28A-203ENST00000617445 UBA2Q9UBT2 640 aaPredicted RBP19.33■□□□□ 0.68
CCDC28A-203ENST00000617445 CNOT8Q9UFF9 292 aaKnown RBP19.33■□□□□ 0.68
CCDC28A-203ENST00000617445 FREM2Q5SZK8 3169 aa19.32■□□□□ 0.68
CCDC28A-203ENST00000617445 ARHGAP42A6NI28 874 aa19.32■□□□□ 0.68
CCDC28A-203ENST00000617445 EEF2KO00418 725 aaKnown RBP19.32■□□□□ 0.68
CCDC28A-203ENST00000617445 DDX3XO00571 662 aaKnown RBP eCLIP19.32■□□□□ 0.687e-17■■■■■ 43.9
CCDC28A-203ENST00000617445 TOR1BO14657 336 aa19.32■□□□□ 0.68
CCDC28A-203ENST00000617445 PIAS2O75928 621 aa19.32■□□□□ 0.68
CCDC28A-203ENST00000617445 ALPPL2P10696 532 aa19.32■□□□□ 0.68
CCDC28A-203ENST00000617445 JUPP14923 745 aa19.32■□□□□ 0.68
CCDC28A-203ENST00000617445 ABL2P42684 1182 aa19.32■□□□□ 0.68
CCDC28A-203ENST00000617445 HCAR3P49019 387 aa19.32■□□□□ 0.68
CCDC28A-203ENST00000617445 DNAJC3Q13217 504 aa19.32■□□□□ 0.68
CCDC28A-203ENST00000617445 CAMK2BQ13554 666 aa19.32■□□□□ 0.68
CCDC28A-203ENST00000617445 KLHL40Q2TBA0 621 aa19.32■□□□□ 0.68
CCDC28A-203ENST00000617445 PROX2Q3B8N5 592 aa19.32■□□□□ 0.68
CCDC28A-203ENST00000617445 DNAAF5Q86Y56 855 aa19.32■□□□□ 0.68
CCDC28A-203ENST00000617445 OR4C6Q8NH72 309 aa19.32■□□□□ 0.68
CCDC28A-203ENST00000617445 SYN2Q92777 582 aaPredicted RBP19.32■□□□□ 0.68
CCDC28A-203ENST00000617445 VOPP1Q96AW1 172 aa19.32■□□□□ 0.68
CCDC28A-203ENST00000617445 KLF6Q99612 283 aaPredicted RBP19.32■□□□□ 0.68
CCDC28A-203ENST00000617445 KLC2Q9H0B6 622 aa19.32■□□□□ 0.68
CCDC28A-203ENST00000617445 ISCUQ9H1K1 167 aa19.32■□□□□ 0.68
CCDC28A-203ENST00000617445 DHX35Q9H5Z1 703 aaKnown RBP19.32■□□□□ 0.68
CCDC28A-203ENST00000617445 DSPP15924 2871 aaKnown RBP19.32■□□□□ 0.68
CCDC28A-203ENST00000617445 SPTY2D1-AS1A0A0U1RR47 76 aa19.31■□□□□ 0.68
CCDC28A-203ENST00000617445 A0A1W2PQJ5 194 aa19.31■□□□□ 0.68
CCDC28A-203ENST00000617445 POM121BA6NF01 834 aa19.31■□□□□ 0.68
CCDC28A-203ENST00000617445 TRABD2BA6NFA1 517 aa19.31■□□□□ 0.68
CCDC28A-203ENST00000617445 TAF4O00268 1085 aa19.31■□□□□ 0.68
CCDC28A-203ENST00000617445 RIOK3O14730 519 aaKnown RBP19.31■□□□□ 0.68
CCDC28A-203ENST00000617445 DAPK3O43293 454 aa19.31■□□□□ 0.68
CCDC28A-203ENST00000617445 PRAMEF11O60813 436 aa19.31■□□□□ 0.68
CCDC28A-203ENST00000617445 SDC3O75056 442 aa19.31■□□□□ 0.68
CCDC28A-203ENST00000617445 E2F1Q01094 437 aa19.31■□□□□ 0.68
CCDC28A-203ENST00000617445 VPS36Q86VN1 386 aa19.31■□□□□ 0.68
CCDC28A-203ENST00000617445 SLC22A18ASQ8N1D0 253 aa19.31■□□□□ 0.68
CCDC28A-203ENST00000617445 ZNF641Q96N77 438 aaPredicted RBP19.31■□□□□ 0.68
CCDC28A-203ENST00000617445 DUSP23Q9BVJ7 150 aa19.31■□□□□ 0.68
CCDC28A-203ENST00000617445 USP29Q9HBJ7 922 aa19.31■□□□□ 0.68
CCDC28A-203ENST00000617445 EVA1BQ9NVM1 165 aa19.31■□□□□ 0.68
CCDC28A-203ENST00000617445 NLGN3Q9NZ94 848 aa19.31■□□□□ 0.68
CCDC28A-203ENST00000617445 IPO11Q9UI26 975 aaKnown RBP19.31■□□□□ 0.68
CCDC28A-203ENST00000617445 WDFY3Q8IZQ1 3526 aa19.31■□□□□ 0.68
CCDC28A-203ENST00000617445 H3BM21 787 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms