RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 SEPT3Q9UH03 358 aa17.04■□□□□ 0.32
LDLR-206ENST00000557958 STOML2Q9UJZ1 356 aa17.04■□□□□ 0.32
LDLR-206ENST00000557958 CEP290O15078 2479 aa17.04■□□□□ 0.32
LDLR-206ENST00000557958 WDR91A4D1P6 747 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 CCT8L1PA6NM43 557 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 KLF11O14901 512 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 BIRC5O15392 142 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 KLKB1P03952 638 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 ALDOAP04075 364 aaKnown RBP17.03■□□□□ 0.32
LDLR-206ENST00000557958 MAXP61244 160 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 RPS24P62847 133 aaKnown RBP17.03■□□□□ 0.32
LDLR-206ENST00000557958 SMAD3P84022 425 aaKnown RBP17.03■□□□□ 0.32
LDLR-206ENST00000557958 DSC2Q02487 901 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 SEPT6Q14141 434 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 ATG16L1Q676U5 607 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 TXNDC8Q6A555 127 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 NLRP9Q7RTR0 991 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 CCDC63Q8NA47 563 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 MRPS31Q92665 395 aaKnown RBP17.03■□□□□ 0.32
LDLR-206ENST00000557958 ISL2Q96A47 359 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 MYEOVQ96EZ4 313 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 PRICKLE1Q96MT3 831 aaPredicted RBP17.03■□□□□ 0.32
LDLR-206ENST00000557958 GCNAQ96QF7 691 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 FAM167BQ9BTA0 163 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 RNF38Q9H0F5 515 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 ACTR5Q9H9F9 607 aaPredicted RBP17.03■□□□□ 0.32
LDLR-206ENST00000557958 PDFQ9HBH1 243 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 ATP13A1Q9HD20 1204 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 GKN1Q9NS71 199 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 IARS2Q9NSE4 1012 aaKnown RBP17.03■□□□□ 0.32
LDLR-206ENST00000557958 SMPD4Q9NXE4 827 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 IL1RAPL1Q9NZN1 696 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 SLC17A6Q9P2U8 582 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 UBA2Q9UBT2 640 aaPredicted RBP17.03■□□□□ 0.32
LDLR-206ENST00000557958 LSM7Q9UK45 103 aaKnown RBP17.03■□□□□ 0.32
LDLR-206ENST00000557958 CHD7Q9P2D1 2997 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 A0A1W2PRU2 124 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 F11P03951 625 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 CES1P23141 567 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 ALDH3A1P30838 453 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 THOC5Q13769 683 aaKnown RBP17.03■□□□□ 0.32
LDLR-206ENST00000557958 KIAA0930Q6ICG6 404 aaPredicted RBP17.03■□□□□ 0.32
LDLR-206ENST00000557958 TRPM8Q7Z2W7 1104 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 TMEM150AQ86TG1 271 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 ARL14EPQ8N8R7 260 aaPredicted RBP17.03■□□□□ 0.32
LDLR-206ENST00000557958 CALML6Q8TD86 181 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 TADA1Q96BN2 335 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 IFT43Q96FT9 208 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 CINPQ9BW66 212 aaPredicted RBP17.03■□□□□ 0.32
LDLR-206ENST00000557958 ASAH2Q9NR71 780 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 TBC1D30Q9Y2I9 924 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 HCFC2Q9Y5Z7 792 aa17.03■□□□□ 0.32
LDLR-206ENST00000557958 KDELR3O43731 214 aa17.02■□□□□ 0.32
LDLR-206ENST00000557958 MPOP05164 745 aa17.02■□□□□ 0.32
LDLR-206ENST00000557958 GSTA1P08263 222 aa17.02■□□□□ 0.32
LDLR-206ENST00000557958 SERPINF2P08697 491 aa17.02■□□□□ 0.32
LDLR-206ENST00000557958 HLA-DPA1P20036 260 aa17.02■□□□□ 0.32
LDLR-206ENST00000557958 BMP8BP34820 402 aa17.02■□□□□ 0.32
LDLR-206ENST00000557958 POLD2P49005 469 aa17.02■□□□□ 0.32
LDLR-206ENST00000557958 ALG1LQ6GMV1 187 aa17.02■□□□□ 0.32
LDLR-206ENST00000557958 CDHR3Q6ZTQ4 885 aa17.02■□□□□ 0.32
LDLR-206ENST00000557958 GAREM2Q75VX8 874 aa17.02■□□□□ 0.32
LDLR-206ENST00000557958 KDELC2Q7Z4H8 507 aa17.02■□□□□ 0.32
LDLR-206ENST00000557958 CNTN4Q8IWV2 1026 aa17.02■□□□□ 0.32
LDLR-206ENST00000557958 MAB21L3Q8N8X9 362 aa17.02■□□□□ 0.32
LDLR-206ENST00000557958 HJURPQ8NCD3 748 aaPredicted RBP17.02■□□□□ 0.32
LDLR-206ENST00000557958 ARMC2Q8NEN0 867 aa17.02■□□□□ 0.32
LDLR-206ENST00000557958 SPOCK2Q92563 424 aa17.02■□□□□ 0.32
LDLR-206ENST00000557958 FEM1CQ96JP0 617 aa17.02■□□□□ 0.32
LDLR-206ENST00000557958 AGAP2Q99490 1192 aa17.02■□□□□ 0.32
LDLR-206ENST00000557958 SEMA3CQ99985 751 aa17.02■□□□□ 0.32
LDLR-206ENST00000557958 SPON2Q9BUD6 331 aa17.02■□□□□ 0.32
LDLR-206ENST00000557958 TSSK1BQ9BXA7 367 aa17.02■□□□□ 0.32
LDLR-206ENST00000557958 IL21Q9HBE4 155 aa17.02■□□□□ 0.32
LDLR-206ENST00000557958 ANKRD65E5RJM6 399 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 PAPSS2O95340 614 aaPredicted RBP17.01■□□□□ 0.31
LDLR-206ENST00000557958 OLFM2O95897 454 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 IL1BP01584 269 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 EPOP01588 193 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 HDCP19113 662 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 HOXD9P28356 352 aaPredicted RBP17.01■□□□□ 0.31
LDLR-206ENST00000557958 CDC25CP30307 473 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 ILF2Q12905 390 aaKnown RBP17.01■□□□□ 0.31
LDLR-206ENST00000557958 RNF43Q68DV7 783 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 FSTL4Q6MZW2 842 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 DCLK2Q8N568 766 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 SLC25A41Q8N5S1 370 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 ARRDC2Q8TBH0 407 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 ZNF398Q8TD17 642 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 CCT6BQ92526 530 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 SLC22A12Q96S37 553 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 MUC3BQ9H195 1237 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 C12orf65Q9H3J6 166 aaKnown RBP17.01■□□□□ 0.31
LDLR-206ENST00000557958 RHOJQ9H4E5 214 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 SLCO1B3Q9NPD5 702 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 SNX15Q9NRS6 342 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 ZNF510Q9Y2H8 683 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 A0A0D9SEW6 157 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 CCDC195A0A1B0GUA6 201 aa17.01■□□□□ 0.31
LDLR-206ENST00000557958 SCAMP3O14828 347 aaKnown RBP17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms