RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 DHRS4L1P0CG22 281 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 HADHAP40939 763 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 CSE1LP55060 971 aaKnown RBP17.07■□□□□ 0.32
LDLR-206ENST00000557958 WNT3AP56704 352 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 GNA12Q03113 381 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 SLC10A7Q0GE19 358 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 FYB2Q5VWT5 728 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 RANBP10Q6VN20 620 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 TDHQ8IZJ6 230 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 HS6ST3Q8IZP7 471 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 ZNF75CPQ92670 426 aaPredicted RBP17.07■□□□□ 0.32
LDLR-206ENST00000557958 MFSD3Q96ES6 412 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 MRGPRX2Q96LB1 330 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 CORO1BQ9BR76 489 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 ARNT2Q9HBZ2 717 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 PCMTD2Q9NV79 361 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 PLLPQ9Y342 182 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 ZFP37Q9Y6Q3 630 aaPredicted RBP17.07■□□□□ 0.32
LDLR-206ENST00000557958 GBF1Q92538 1859 aa17.06■□□□□ 0.32
LDLR-206ENST00000557958 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.06■□□□□ 0.32
LDLR-206ENST00000557958 A0A1B0GVM2 712 aa17.06■□□□□ 0.32
LDLR-206ENST00000557958 TYW5A2RUC4 315 aaKnown RBP17.06■□□□□ 0.32
LDLR-206ENST00000557958 C2orf78A6NCI8 922 aa17.06■□□□□ 0.32
LDLR-206ENST00000557958 TCAF2A6NFQ2 919 aa17.06■□□□□ 0.32
LDLR-206ENST00000557958 MBL2P11226 248 aaPredicted RBP17.06■□□□□ 0.32
LDLR-206ENST00000557958 SLC6A4P31645 630 aa17.06■□□□□ 0.32
LDLR-206ENST00000557958 ETV4P43268 484 aa17.06■□□□□ 0.32
LDLR-206ENST00000557958 ZNF177Q13360 481 aaPredicted RBP17.06■□□□□ 0.32
LDLR-206ENST00000557958 UGP2Q16851 508 aa17.06■□□□□ 0.32
LDLR-206ENST00000557958 STXBP5Q5T5C0 1151 aa17.06■□□□□ 0.32
LDLR-206ENST00000557958 RFWD3Q6PCD5 774 aa17.06■□□□□ 0.32
LDLR-206ENST00000557958 STRA8Q7Z7C7 330 aa17.06■□□□□ 0.32
LDLR-206ENST00000557958 ADGRD2Q7Z7M1 963 aa17.06■□□□□ 0.32
LDLR-206ENST00000557958 SETD3Q86TU7 594 aaPredicted RBP17.06■□□□□ 0.32
LDLR-206ENST00000557958 RBBP8Q99708 897 aa17.06■□□□□ 0.32
LDLR-206ENST00000557958 KLF16Q9BXK1 252 aaPredicted RBP17.06■□□□□ 0.32
LDLR-206ENST00000557958 SLC13A1Q9BZW2 595 aa17.06■□□□□ 0.32
LDLR-206ENST00000557958 MANSC1Q9H8J5 431 aa17.06■□□□□ 0.32
LDLR-206ENST00000557958 KLHL14Q9P2G3 628 aa17.06■□□□□ 0.32
LDLR-206ENST00000557958 GRID1Q9ULK0 1009 aa17.06■□□□□ 0.32
LDLR-206ENST00000557958 PHTF1Q9UMS5 762 aa17.06■□□□□ 0.32
LDLR-206ENST00000557958 TCAF1Q9Y4C2 921 aa17.06■□□□□ 0.32
LDLR-206ENST00000557958 HMX2A2RU54 273 aa17.05■□□□□ 0.32
LDLR-206ENST00000557958 EDF1O60869 148 aaKnown RBP17.05■□□□□ 0.32
LDLR-206ENST00000557958 GLRA3O75311 464 aa17.05■□□□□ 0.32
LDLR-206ENST00000557958 MYL4P12829 197 aa17.05■□□□□ 0.32
LDLR-206ENST00000557958 GABRR2P28476 465 aa17.05■□□□□ 0.32
LDLR-206ENST00000557958 CD86P42081 329 aa17.05■□□□□ 0.32
LDLR-206ENST00000557958 LIMK2P53671 638 aa17.05■□□□□ 0.32
LDLR-206ENST00000557958 POU6F1Q14863 301 aa17.05■□□□□ 0.32
LDLR-206ENST00000557958 DBN1Q16643 649 aa17.05■□□□□ 0.32
LDLR-206ENST00000557958 HSP90AA5PQ58FG0 334 aa17.05■□□□□ 0.32
LDLR-206ENST00000557958 TEDDM1Q5T9Z0 273 aa17.05■□□□□ 0.32
LDLR-206ENST00000557958 IL31Q6EBC2 164 aa17.05■□□□□ 0.32
LDLR-206ENST00000557958 DENND5AQ6IQ26 1287 aa17.05■□□□□ 0.32
LDLR-206ENST00000557958 KDELC1Q6UW63 502 aa17.05■□□□□ 0.32
LDLR-206ENST00000557958 KYAT3Q6YP21 454 aaKnown RBP17.05■□□□□ 0.32
LDLR-206ENST00000557958 FAM47EQ6ZV65 393 aa17.05■□□□□ 0.32
LDLR-206ENST00000557958 PACS2Q86VP3 889 aa17.05■□□□□ 0.32
LDLR-206ENST00000557958 CFAP52Q8N1V2 620 aa17.05■□□□□ 0.32
LDLR-206ENST00000557958 TLE6Q9H808 572 aa17.05■□□□□ 0.32
LDLR-206ENST00000557958 DCDC2Q9UHG0 476 aa17.05■□□□□ 0.32
LDLR-206ENST00000557958 ILVBLA1L0T0 632 aa17.05■□□□□ 0.32
LDLR-206ENST00000557958 HEATR9A2RTY3 570 aa17.05■□□□□ 0.32
LDLR-206ENST00000557958 EPOPA6NHQ4 379 aa17.05■□□□□ 0.32
LDLR-206ENST00000557958 GJA1P17302 382 aa17.05■□□□□ 0.32
LDLR-206ENST00000557958 SERPINB4P48594 390 aa17.05■□□□□ 0.32
LDLR-206ENST00000557958 SERPINB8P50452 374 aa17.05■□□□□ 0.32
LDLR-206ENST00000557958 LAMB3Q13751 1172 aa17.05■□□□□ 0.32
LDLR-206ENST00000557958 RFTN1Q14699 578 aaPredicted RBP17.05■□□□□ 0.32
LDLR-206ENST00000557958 PCSK7Q16549 785 aa17.05■□□□□ 0.32
LDLR-206ENST00000557958 CHRDL2Q6WN34 429 aa17.05■□□□□ 0.32
LDLR-206ENST00000557958 GBP7Q8N8V2 638 aaPredicted RBP17.05■□□□□ 0.32
LDLR-206ENST00000557958 CYP2S1Q96SQ9 504 aa17.05■□□□□ 0.32
LDLR-206ENST00000557958 IGFLR1Q9H665 355 aa17.05■□□□□ 0.32
LDLR-206ENST00000557958 HCFC1R1Q9NWW0 138 aa17.05■□□□□ 0.32
LDLR-206ENST00000557958 PRKAG3Q9UGI9 489 aa17.05■□□□□ 0.32
LDLR-206ENST00000557958 AGO1Q9UL18 857 aaKnown RBP17.05■□□□□ 0.32
LDLR-206ENST00000557958 PSAT1Q9Y617 370 aa17.05■□□□□ 0.32
LDLR-206ENST00000557958 LAMA3Q16787 3333 aa17.04■□□□□ 0.32
LDLR-206ENST00000557958 TPP1O14773 563 aa17.04■□□□□ 0.32
LDLR-206ENST00000557958 RHOCP08134 193 aa17.04■□□□□ 0.32
LDLR-206ENST00000557958 TROVE2P10155 538 aaKnown RBP eCLIP17.04■□□□□ 0.32
LDLR-206ENST00000557958 IRF1P10914 325 aa17.04■□□□□ 0.32
LDLR-206ENST00000557958 NMBRP28336 390 aa17.04■□□□□ 0.32
LDLR-206ENST00000557958 TYK2P29597 1187 aa17.04■□□□□ 0.32
LDLR-206ENST00000557958 ACVRL1P37023 503 aa17.04■□□□□ 0.32
LDLR-206ENST00000557958 NRIP1P48552 1158 aa17.04■□□□□ 0.32
LDLR-206ENST00000557958 SERPINH1P50454 418 aaKnown RBP17.04■□□□□ 0.32
LDLR-206ENST00000557958 OXCT1P55809 520 aa17.04■□□□□ 0.32
LDLR-206ENST00000557958 CYP4F8P98187 520 aa17.04■□□□□ 0.32
LDLR-206ENST00000557958 SLC14A2Q15849 920 aa17.04■□□□□ 0.32
LDLR-206ENST00000557958 INSCQ1MX18 579 aa17.04■□□□□ 0.32
LDLR-206ENST00000557958 PDE12Q6L8Q7 609 aaKnown RBP17.04■□□□□ 0.32
LDLR-206ENST00000557958 ZNF783Q6ZMS7 281 aa17.04■□□□□ 0.32
LDLR-206ENST00000557958 RAB3IL1Q8TBN0 382 aa17.04■□□□□ 0.32
LDLR-206ENST00000557958 TIFAQ96CG3 184 aa17.04■□□□□ 0.32
LDLR-206ENST00000557958 RANBP9Q96S59 729 aa17.04■□□□□ 0.32
LDLR-206ENST00000557958 ATXN3LQ9H3M9 355 aa17.04■□□□□ 0.32
LDLR-206ENST00000557958 KDM4CQ9H3R0 1056 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms