RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 CBX3Q13185 183 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 DNAJC14Q6Y2X3 702 aaPredicted RBP14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 ARHGAP36Q6ZRI8 547 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 ARL10Q8N8L6 244 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 COLGALT1Q8NBJ5 622 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 OR8H1Q8NGG4 311 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 NKX2-3Q8TAU0 364 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 MYH7P12883 1935 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 SQLEQ14534 574 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 RD3Q7Z3Z2 195 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 ZNF554Q86TJ5 538 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 MIB1Q86YT6 1006 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 ZNF563Q8TA94 476 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 ACTRT1Q8TDG2 376 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 NDUFS2O75306 463 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 FAM153BP0C7A2 387 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 AMD1P17707 334 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 PSMA1P25786 263 aaKnown RBP14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 MARSP56192 900 aaKnown RBP14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 MAZP56270 477 aaKnown RBP14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 LCN1P1Q5VSP4 162 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 MCEMP1Q8IX19 187 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 ANKFN1Q8N957 763 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 NEDD4LQ96PU5 975 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 CLK4Q9HAZ1 481 aaKnown RBP14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 MOV10Q9HCE1 1003 aaKnown RBP14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 SPG21Q9NZD8 308 aa14.07□□□□□ -0.16
CCDC88A-201ENST00000263630 BTN3A1O00481 513 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 SAPCD2Q86UD0 394 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 RIOK2Q9BVS4 552 aaKnown RBP14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 FBXL21Q9UKT6 434 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 TRDMT1O14717 391 aaKnown RBP14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 RAMP2O60895 175 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 MCAMP43121 646 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 PCDH19Q8TAB3 1148 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 LRRC20Q8TCA0 184 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 STK32AQ8WU08 396 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 KCNK4Q9NYG8 393 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 UXTQ9UBK9 157 aaPredicted RBP14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 MAGEC1O60732 1142 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 PPIBP23284 216 aaKnown RBP14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 MAPKAPK3Q16644 382 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 ZNF285Q96NJ3 590 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 AGPAT5Q9NUQ2 364 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 L7N2F9 121 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 VAMP2P63027 116 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 SEMA6AQ9H2E6 1030 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 PCDH9Q9HC56 1237 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 FBXO9Q9UK97 447 aaPredicted RBP14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 TBX20Q9UMR3 447 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 ALG5Q9Y673 324 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 UGT2B17O75795 530 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 CDK9P50750 372 aaKnown RBP14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 ZNF135P52742 658 aaPredicted RBP14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 NFE2Q16621 373 aaPredicted RBP14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 FAXCQ5TGI0 409 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 TCEAL3Q969E4 200 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 SCGB3A2Q96PL1 93 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 CDC42EP4Q9H3Q1 356 aaKnown RBP14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 DNPEPQ9ULA0 475 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 GPATCH8Q9UKJ3 1502 aaKnown RBP14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 TFECO14948 347 aaPredicted RBP14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 OR1E1P30953 314 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 EFEMP1Q12805 493 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 RFTN2Q52LD8 501 aaPredicted RBP14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 WDR93Q6P2C0 686 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 OR8H3Q8N146 312 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 LZTR1Q8N653 840 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 GIPC3Q8TF64 312 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 SELENOMQ8WWX9 145 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 CASKIN2Q8WXE0 1202 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 ZNF350Q9GZX5 532 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 ABCG2Q9UNQ0 655 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 MAPK10P53779 464 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 DPYSQ14117 519 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 ABCA11PQ4W5N1 156 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 ALG10Q5BKT4 473 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 ATXN7L2Q5T6C5 722 aaPredicted RBP14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 MND1Q9BWT6 205 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 POMKQ9H5K3 350 aa14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 MTF2Q9Y483 593 aaPredicted RBP14.06□□□□□ -0.16
CCDC88A-201ENST00000263630 ACO1P21399 889 aaKnown RBP14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 BUD31P41223 144 aaPredicted RBP14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 MTMR2Q13614 643 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 MYO18AQ92614 2054 aaKnown RBP14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 CYP11B1P15538 503 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 GLRA4Q5JXX5 417 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 BEND5Q7L4P6 421 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 PRCCQ92733 491 aaPredicted RBP14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 GLT1D1Q96MS3 346 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 HIST1H2AAQ96QV6 131 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 ZNF471Q9BX82 626 aaPredicted RBP14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 DCLK3Q9C098 648 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 METTL8Q9H825 291 aaKnown RBP14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 OR1I1O60431 355 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 SRCP12931 536 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 RXRBP28702 533 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 UBE2Q1Q7Z7E8 422 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 UNC5CLQ8IV45 518 aa14.05□□□□□ -0.16
CCDC88A-201ENST00000263630 PLEKHF1Q96S99 279 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 104.9 ms