RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 RHOT1Q8IXI2 618 aa17.58■□□□□ 0.4
SHKBP1-212ENST00000596163 AADATQ8N5Z0 425 aa17.58■□□□□ 0.4
SHKBP1-212ENST00000596163 CHST14Q8NCH0 376 aa17.58■□□□□ 0.4
SHKBP1-212ENST00000596163 OR14C36Q8NHC7 312 aa17.58■□□□□ 0.4
SHKBP1-212ENST00000596163 DNASE2BQ8WZ79 361 aa17.58■□□□□ 0.4
SHKBP1-212ENST00000596163 TM6SF2Q9BZW4 377 aa17.58■□□□□ 0.4
SHKBP1-212ENST00000596163 DDX56Q9NY93 547 aaKnown RBP17.58■□□□□ 0.4
SHKBP1-212ENST00000596163 SARDHQ9UL12 918 aa17.58■□□□□ 0.4
SHKBP1-212ENST00000596163 ACTL7AQ9Y615 435 aa17.58■□□□□ 0.4
SHKBP1-212ENST00000596163 EP300Q09472 2414 aaPredicted RBP17.58■□□□□ 0.4
SHKBP1-212ENST00000596163 FAM186AA6NE01 2351 aa17.58■□□□□ 0.4
SHKBP1-212ENST00000596163 EML5Q05BV3 1969 aa17.57■□□□□ 0.4
SHKBP1-212ENST00000596163 FAM47DPA6NHR8 397 aa17.57■□□□□ 0.4
SHKBP1-212ENST00000596163 KDELR1P24390 212 aa17.57■□□□□ 0.4
SHKBP1-212ENST00000596163 IL4RP24394 825 aa17.57■□□□□ 0.4
SHKBP1-212ENST00000596163 ARSEP51690 589 aa17.57■□□□□ 0.4
SHKBP1-212ENST00000596163 CCDC6Q16204 474 aa17.57■□□□□ 0.4
SHKBP1-212ENST00000596163 ANKRD20A8PQ5CZ79 823 aa17.57■□□□□ 0.4
SHKBP1-212ENST00000596163 KIAA0895LQ68EN5 471 aa17.57■□□□□ 0.4
SHKBP1-212ENST00000596163 ARHGAP12Q8IWW6 846 aa17.57■□□□□ 0.4
SHKBP1-212ENST00000596163 GRIN3AQ8TCU5 1115 aa17.57■□□□□ 0.4
SHKBP1-212ENST00000596163 NSMCE1Q8WV22 266 aa17.57■□□□□ 0.4
SHKBP1-212ENST00000596163 ZNF599Q96NL3 588 aa17.57■□□□□ 0.4
SHKBP1-212ENST00000596163 OSBPL1AQ9BXW6 950 aa17.57■□□□□ 0.4
SHKBP1-212ENST00000596163 MAK16Q9BXY0 300 aaKnown RBP17.57■□□□□ 0.4
SHKBP1-212ENST00000596163 C6orf106Q9H6K1 298 aaPredicted RBP17.57■□□□□ 0.4
SHKBP1-212ENST00000596163 IPO11Q9UI26 975 aaKnown RBP17.57■□□□□ 0.4
SHKBP1-212ENST00000596163 SLC6A14Q9UN76 642 aa17.57■□□□□ 0.4
SHKBP1-212ENST00000596163 WASF2Q9Y6W5 498 aa17.57■□□□□ 0.4
SHKBP1-212ENST00000596163 MYO15AQ9UKN7 3530 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 TBC1D3DA0A087WVF3 549 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 TBC1D3IA0A087WXS9 549 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 TBC1D3EA0A087X179 549 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 TBC1D3KA0A087X1G2 549 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 TBC1D3FA6NER0 549 aaPredicted RBP17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 ZNF487B1APH4 448 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 TBC1D3LB9A6J9 549 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 J3KR12 359 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 KRIT1O00522 736 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 LEFTY1O75610 366 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 PALMO75781 387 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 FSBPO95073 299 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 CTSLP07711 333 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 TBC1D3HP0C7X1 549 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 COMTP21964 271 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 DRD3P35462 400 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 RENBPP51606 427 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 CCR5P51681 352 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 NAP1L1P55209 391 aaKnown RBP17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 CNTN1Q12860 1018 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 GRM3Q14832 879 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 SF3A2Q15428 464 aaKnown RBP17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 TRIM61Q5EBN2 209 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 TBC1D3GQ6DHY5 549 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 TBC1D3CQ6IPX1 549 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 SLC23A3Q6PIS1 610 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 RAD9BQ6WBX8 426 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 KIAA1328Q86T90 577 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 VSIG1Q86XK7 387 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 CPNE8Q86YQ8 564 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 TBC1D3Q8IZP1 549 aaPredicted RBP17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 BBS5Q8N3I7 341 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 NPWQ8N729 165 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 SNX19Q92543 992 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 FAM131CQ96AQ9 280 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 HDAC8Q9BY41 377 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 MIR1-1HGQ9H1L0 117 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 ZDHHC6Q9H6R6 413 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 PDFQ9HBH1 243 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 TMEM74BQ9NUR3 256 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 ETNK2Q9NVF9 386 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 SERGEFQ9UGK8 458 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 ALG6Q9Y672 507 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 PLXND1Q9Y4D7 1925 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 VPS13AQ96RL7 3174 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 ABCA7Q8IZY2 2146 aa17.56■□□□□ 0.4
SHKBP1-212ENST00000596163 A0A1B0GTW7 788 aa17.55■□□□□ 0.4
SHKBP1-212ENST00000596163 LRRD1A4D1F6 860 aa17.55■□□□□ 0.4
SHKBP1-212ENST00000596163 BTNL10A8MVZ5 291 aa17.55■□□□□ 0.4
SHKBP1-212ENST00000596163 PLRG1O43660 514 aaKnown RBP17.55■□□□□ 0.4
SHKBP1-212ENST00000596163 CFIP05156 583 aa17.55■□□□□ 0.4
SHKBP1-212ENST00000596163 SERPINF2P08697 491 aa17.55■□□□□ 0.4
SHKBP1-212ENST00000596163 CD48P09326 243 aa17.55■□□□□ 0.4
SHKBP1-212ENST00000596163 ITGB7P26010 798 aa17.55■□□□□ 0.4
SHKBP1-212ENST00000596163 NUDT1P36639 197 aa17.55■□□□□ 0.4
SHKBP1-212ENST00000596163 VAV2P52735 878 aa17.55■□□□□ 0.4
SHKBP1-212ENST00000596163 ADPRHP54922 357 aa17.55■□□□□ 0.4
SHKBP1-212ENST00000596163 MMRN1Q13201 1228 aa17.55■□□□□ 0.4
SHKBP1-212ENST00000596163 CYTH1Q15438 398 aa17.55■□□□□ 0.4
SHKBP1-212ENST00000596163 IFI16Q16666 785 aaKnown RBP17.55■□□□□ 0.4
SHKBP1-212ENST00000596163 POM121L1PQ3SYA9 428 aa17.55■□□□□ 0.4
SHKBP1-212ENST00000596163 NCEH1Q6PIU2 408 aa17.55■□□□□ 0.4
SHKBP1-212ENST00000596163 ERN2Q76MJ5 926 aaKnown RBP17.55■□□□□ 0.4
SHKBP1-212ENST00000596163 ATPAF2Q8N5M1 289 aa17.55■□□□□ 0.4
SHKBP1-212ENST00000596163 PCDH19Q8TAB3 1148 aa17.55■□□□□ 0.4
SHKBP1-212ENST00000596163 NETO1Q8TDF5 533 aa17.55■□□□□ 0.4
SHKBP1-212ENST00000596163 BIRC7Q96CA5 298 aa17.55■□□□□ 0.4
SHKBP1-212ENST00000596163 FAF2Q96CS3 445 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms