RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 MREGQ8N565 214 aa8.84□□□□□ -1
LIMCH1-209ENST00000509277 CCDC89Q8N998 374 aa8.84□□□□□ -1
LIMCH1-209ENST00000509277 PABPC5Q96DU9 382 aaKnown RBP8.84□□□□□ -1
LIMCH1-209ENST00000509277 PIH1D1Q9NWS0 290 aaKnown RBP8.84□□□□□ -1
LIMCH1-209ENST00000509277 DNMT3BQ9UBC3 853 aaKnown RBP8.84□□□□□ -1
LIMCH1-209ENST00000509277 DNPEPQ9ULA0 475 aa8.84□□□□□ -1
LIMCH1-209ENST00000509277 CCL26Q9Y258 94 aa8.84□□□□□ -1
LIMCH1-209ENST00000509277 IRAK2O43187 625 aa8.83□□□□□ -1
LIMCH1-209ENST00000509277 LRIG2O94898 1065 aa8.83□□□□□ -1
LIMCH1-209ENST00000509277 LYNP07948 512 aa8.83□□□□□ -1
LIMCH1-209ENST00000509277 TROVE2P10155 538 aaKnown RBP eCLIP8.83□□□□□ -1
LIMCH1-209ENST00000509277 RBP3P10745 1247 aa8.83□□□□□ -1
LIMCH1-209ENST00000509277 HMGA1P17096 107 aaKnown RBP8.83□□□□□ -1
LIMCH1-209ENST00000509277 PTPN2P17706 415 aa8.83□□□□□ -1
LIMCH1-209ENST00000509277 MMP13P45452 471 aa8.83□□□□□ -1
LIMCH1-209ENST00000509277 CCDC92Q53HC0 331 aaPredicted RBP8.83□□□□□ -1
LIMCH1-209ENST00000509277 RAB41Q5JT25 222 aa8.83□□□□□ -1
LIMCH1-209ENST00000509277 IRGCQ6NXR0 463 aa8.83□□□□□ -1
LIMCH1-209ENST00000509277 TTC7BQ86TV6 843 aa8.83□□□□□ -1
LIMCH1-209ENST00000509277 ANKMY2Q8IV38 441 aa8.83□□□□□ -1
LIMCH1-209ENST00000509277 FAM71DQ8N9W8 422 aa8.83□□□□□ -1
LIMCH1-209ENST00000509277 AGAP3Q96P47 875 aa8.83□□□□□ -1
LIMCH1-209ENST00000509277 KLHL4Q9C0H6 718 aa8.83□□□□□ -1
LIMCH1-209ENST00000509277 IQCGQ9H095 443 aaKnown RBP8.83□□□□□ -1
LIMCH1-209ENST00000509277 FAM124BQ9H5Z6 455 aaPredicted RBP8.83□□□□□ -1
LIMCH1-209ENST00000509277 DDX56Q9NY93 547 aaKnown RBP8.83□□□□□ -1
LIMCH1-209ENST00000509277 CCDC188H7C350 402 aa8.83□□□□□ -1
LIMCH1-209ENST00000509277 MCF2LO15068 1137 aa8.83□□□□□ -1
LIMCH1-209ENST00000509277 ERCC2P18074 760 aa8.83□□□□□ -1
LIMCH1-209ENST00000509277 ALDH18A1P54886 795 aaKnown RBP8.83□□□□□ -1
LIMCH1-209ENST00000509277 BASP1P80723 227 aaKnown RBP8.83□□□□□ -1
LIMCH1-209ENST00000509277 CREMQ03060 361 aa8.83□□□□□ -1
LIMCH1-209ENST00000509277 MGAT5Q09328 741 aa8.83□□□□□ -1
LIMCH1-209ENST00000509277 SMARCB1Q12824 385 aa8.83□□□□□ -1
LIMCH1-209ENST00000509277 SEPT6Q14141 434 aa8.83□□□□□ -1
LIMCH1-209ENST00000509277 ARHGAP15Q53QZ3 475 aa8.83□□□□□ -1
LIMCH1-209ENST00000509277 AGGF1Q8N302 714 aaeCLIP8.83□□□□□ -1
LIMCH1-209ENST00000509277 SP7Q8TDD2 431 aaPredicted RBP8.83□□□□□ -1
LIMCH1-209ENST00000509277 MYLIPQ8WY64 445 aa8.83□□□□□ -1
LIMCH1-209ENST00000509277 PSMG2Q969U7 264 aa8.83□□□□□ -1
LIMCH1-209ENST00000509277 CNBD2Q96M20 576 aa8.83□□□□□ -1
LIMCH1-209ENST00000509277 LGMNQ99538 433 aa8.83□□□□□ -1
LIMCH1-209ENST00000509277 CENPOQ9BU64 300 aa8.83□□□□□ -1
LIMCH1-209ENST00000509277 NDEL1Q9GZM8 345 aa8.83□□□□□ -1
LIMCH1-209ENST00000509277 ARMC7Q9H6L4 198 aa8.83□□□□□ -1
LIMCH1-209ENST00000509277 FBXW11Q9UKB1 542 aa8.83□□□□□ -1
LIMCH1-209ENST00000509277 CHKBQ9Y259 395 aa8.83□□□□□ -1
LIMCH1-209ENST00000509277 CCDC78A2IDD5 438 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 KCNN4O15554 427 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 CNTN5O94779 1100 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 F9P00740 461 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 SLC4A1P02730 911 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 VAV1P15498 845 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 MSX2P35548 267 aaPredicted RBP8.82□□□□□ -1
LIMCH1-209ENST00000509277 CHKAP35790 457 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 DLX2Q07687 328 aaPredicted RBP8.82□□□□□ -1
LIMCH1-209ENST00000509277 MED21Q13503 144 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 DPYSL3Q14195 570 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 PPP2R5DQ14738 602 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 PM20D1Q6GTS8 502 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 ZNF662Q6ZS27 426 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 SCUBE1Q8IWY4 988 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 ATP6V0D2Q8N8Y2 350 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 EXD1Q8NHP7 514 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 AGR3Q8TD06 166 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 C2orf15Q8WU43 125 aaKnown RBP8.82□□□□□ -1
LIMCH1-209ENST00000509277 PPP1R36Q96LQ0 422 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 GAS2L1Q99501 681 aaPredicted RBP8.82□□□□□ -1
LIMCH1-209ENST00000509277 ZNF184Q99676 751 aaPredicted RBP8.82□□□□□ -1
LIMCH1-209ENST00000509277 ZDHHC4Q9NPG8 344 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 UBP1Q9NZI7 540 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 UXTQ9UBK9 157 aaPredicted RBP8.82□□□□□ -1
LIMCH1-209ENST00000509277 WNT6Q9Y6F9 365 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 USP3Q9Y6I4 520 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 TRAV19A0A0A6YYK7 116 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 F5H5T6 163 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 I6L893 689 aaPredicted RBP8.82□□□□□ -1
LIMCH1-209ENST00000509277 RIPK2O43353 540 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 MTA2O94776 668 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 CEBPBP17676 345 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 FOXN2P32314 431 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 PTPN9P43378 593 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 TMED10P49755 219 aaKnown RBP8.82□□□□□ -1
LIMCH1-209ENST00000509277 IL31Q6EBC2 164 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 ELMSAN1Q6PJG2 1045 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 RBM44Q6ZP01 1051 aaKnown RBP8.82□□□□□ -1
LIMCH1-209ENST00000509277 STRADAQ7RTN6 431 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 CACUL1Q86Y37 369 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 POU5F2Q8N7G0 328 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 PCDH19Q8TAB3 1148 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 SH3RF2Q8TEC5 729 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 CSPG4P5Q96PW8 444 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 ADAM7Q9H2U9 754 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 LSM7Q9UK45 103 aaKnown RBP8.82□□□□□ -1
LIMCH1-209ENST00000509277 PTPRSQ13332 1948 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 hCG_1818297A0A087WSY0 165 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 H0Y626 953 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 IMPDH2P12268 514 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 OR1E1P30953 314 aa8.82□□□□□ -1
LIMCH1-209ENST00000509277 SLC11A2P49281 568 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms