RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 SLC5A3P53794 718 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 MLF2Q15773 248 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 ZNF792Q3KQV3 632 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 RFWD3Q6PCD5 774 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 ATL1Q8WXF7 558 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 RPL10LQ96L21 214 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 TMEM60Q9H2L4 133 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 MRPL46Q9H2W6 279 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 ARL15Q9NXU5 204 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 SH3BP4Q9P0V3 963 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 OR12D3Q9UGF7 316 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 ZC3H7BQ9UGR2 993 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 FAM153AQ9UHL3 310 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 FRMPD4Q14CM0 1322 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 E2F8A0AVK6 867 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 RAD23AP54725 363 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 SLC9A4Q6AI14 798 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 KBTBD6Q86V97 674 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 RASGEF1AQ8N9B8 481 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 RIT1Q92963 219 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 ZNF333Q96JL9 665 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 SMG9Q9H0W8 520 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 C3orf14Q9HBI5 128 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 XPO7Q9UIA9 1087 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 FAF1Q9UNN5 650 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 ACOT7O00154 380 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 DCNP07585 359 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 JUNDP17535 347 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 IL12BP29460 328 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 GLRBP48167 497 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 CHTF18Q8WVB6 975 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 WNT8BQ93098 351 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 BTN2A3PQ96KV6 586 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 NEK6Q9HC98 313 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 TMEM9BQ9NQ34 198 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 USP15Q9Y4E8 981 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 EFCAB7A8K855 629 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 O00370 1275 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 TEX28O15482 410 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 BAG2O95816 211 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 HEXBP07686 556 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 SLC6A3Q01959 620 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 LRRC14Q15048 493 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 DUS1LQ6P1R4 473 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 FAM228AQ86W67 206 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 KLHL32Q96NJ5 620 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 S100A13Q99584 98 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 ILKAPQ9H0C8 392 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 TMPRSS4Q9NRS4 437 aa9.32□□□□□ -0.92
LIMCH1-202ENST00000381753 MCIDASD6RGH6 385 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 GFRA3O60609 400 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 LRCH4O75427 683 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 ARG2P78540 354 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 ECT2LQ008S8 904 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 LPIN1Q14693 890 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 SF3B4Q15427 424 aaKnown RBP eCLIP9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 CLEC1AQ8NC01 280 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 ZDHHC12Q96GR4 267 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 DEPDC7Q96QD5 511 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 ACAT2Q9BWD1 397 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 AGPAT5Q9NUQ2 364 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 PSMD13Q9UNM6 376 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 PARP4Q9UKK3 1724 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 PPP1R3GB7ZBB8 358 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 ANGPT2O15123 496 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 HMGB3O15347 200 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 TSPAN1O60635 241 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 SLITRK3O94933 977 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 CYBAP13498 195 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 DGKAP23743 735 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 SLCO1A2P46721 670 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 NRG3P56975 720 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 LRRC52Q8N7C0 313 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 IPCEF1Q8WWN9 437 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 EDEM2Q9BV94 578 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 KLHL25Q9H0H3 589 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 IL17RBQ9NRM6 502 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 PISDQ9UG56 409 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 PRKAG3Q9UGI9 489 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 ITGB1BP2Q9UKP3 347 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 TAF6LQ9Y6J9 622 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 ZNF780BQ9Y6R6 833 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 A0A0U1RQF3 1178 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 A0A1B0GUA9 196 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 PAEPP09466 180 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 NDUFS1P28331 727 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 ARHGAP25P42331 645 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 ZNF135P52742 658 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 SLC20A2Q08357 652 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 PWP1Q13610 501 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 DLG2Q15700 870 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 AGAP9Q5VTM2 703 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 SLC9A9Q8IVB4 645 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 OR9Q1Q8NGQ5 310 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 PHACTR1Q9C0D0 580 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 GGA2Q9UJY4 613 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 KLRG2A4D1S0 409 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 RFPL2O75678 378 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 UBXN7O94888 489 aa9.31□□□□□ -0.92
LIMCH1-202ENST00000381753 NOS3P29474 1203 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms