RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 EURLQ9NYK6 297 aa19.53■□□□□ 0.72
USP48-201ENST00000308271 HACL1Q9UJ83 578 aa19.53■□□□□ 0.72
USP48-201ENST00000308271 RECQL5O94762 991 aaPredicted RBP19.52■□□□□ 0.72
USP48-201ENST00000308271 EIF2S1P05198 315 aaKnown RBP19.52■□□□□ 0.72
USP48-201ENST00000308271 LY6KQ17RY6 165 aa19.52■□□□□ 0.72
USP48-201ENST00000308271 PPM1JQ5JR12 505 aa19.52■□□□□ 0.72
USP48-201ENST00000308271 GK5Q6ZS86 529 aa19.52■□□□□ 0.72
USP48-201ENST00000308271 NIPA2Q8N8Q9 360 aa19.52■□□□□ 0.72
USP48-201ENST00000308271 OR2T34Q8NGX1 318 aa19.52■□□□□ 0.72
USP48-201ENST00000308271 OR2T3Q8NH03 318 aa19.52■□□□□ 0.72
USP48-201ENST00000308271 REXO4Q9GZR2 422 aaKnown RBP19.52■□□□□ 0.72
USP48-201ENST00000308271 TYROBPO43914 113 aa19.52■□□□□ 0.72
USP48-201ENST00000308271 SEC24AO95486 1093 aa19.52■□□□□ 0.72
USP48-201ENST00000308271 CCNE2O96020 404 aa19.52■□□□□ 0.72
USP48-201ENST00000308271 CETPP11597 493 aa19.52■□□□□ 0.72
USP48-201ENST00000308271 SLC18A2Q05940 514 aa19.52■□□□□ 0.72
USP48-201ENST00000308271 BNIPLQ7Z465 357 aa19.52■□□□□ 0.72
USP48-201ENST00000308271 ANKRD52Q8NB46 1076 aa19.52■□□□□ 0.72
USP48-201ENST00000308271 KATNAL1Q9BW62 490 aa19.52■□□□□ 0.72
USP48-201ENST00000308271 ADAM7Q9H2U9 754 aa19.52■□□□□ 0.72
USP48-201ENST00000308271 TMEM245Q9H330 911 aa19.52■□□□□ 0.72
USP48-201ENST00000308271 LINC00854A0A1B0GVQ3 168 aa19.52■□□□□ 0.72
USP48-201ENST00000308271 LZTS3O60299 673 aaPredicted RBP19.52■□□□□ 0.72
USP48-201ENST00000308271 HSMCR30P0CW71 290 aa19.52■□□□□ 0.72
USP48-201ENST00000308271 GPX6P59796 221 aa19.52■□□□□ 0.72
USP48-201ENST00000308271 ARL13AQ5H913 290 aaPredicted RBP19.52■□□□□ 0.72
USP48-201ENST00000308271 CLYBLQ8N0X4 340 aa19.52■□□□□ 0.72
USP48-201ENST00000308271 LEMD2Q8NC56 503 aa19.52■□□□□ 0.72
USP48-201ENST00000308271 TRAPPC12Q8WVT3 735 aa19.52■□□□□ 0.72
USP48-201ENST00000308271 ABHD8Q96I13 439 aa19.52■□□□□ 0.72
USP48-201ENST00000308271 RIBC2Q9H4K1 309 aa19.52■□□□□ 0.72
USP48-201ENST00000308271 FBXO5Q9UKT4 447 aa19.52■□□□□ 0.72
USP48-201ENST00000308271 ATP6V1G1O75348 118 aa19.52■□□□□ 0.71
USP48-201ENST00000308271 GCATO75600 419 aa19.52■□□□□ 0.71
USP48-201ENST00000308271 H6PDO95479 791 aa19.52■□□□□ 0.71
USP48-201ENST00000308271 CST3P01034 146 aaPredicted RBP19.52■□□□□ 0.71
USP48-201ENST00000308271 ZNF12P17014 697 aa19.52■□□□□ 0.71
USP48-201ENST00000308271 AOC1P19801 751 aa19.52■□□□□ 0.71
USP48-201ENST00000308271 LIMK2P53671 638 aa19.52■□□□□ 0.71
USP48-201ENST00000308271 GBE1Q04446 702 aa19.52■□□□□ 0.71
USP48-201ENST00000308271 DGCR6Q14129 220 aa19.52■□□□□ 0.71
USP48-201ENST00000308271 RHBDF2Q6PJF5 856 aa19.52■□□□□ 0.71
USP48-201ENST00000308271 FBXO16Q8IX29 292 aaPredicted RBP19.52■□□□□ 0.71
USP48-201ENST00000308271 RSPH1Q8WYR4 309 aa19.52■□□□□ 0.71
USP48-201ENST00000308271 TMEM216Q9P0N5 145 aa19.52■□□□□ 0.71
USP48-201ENST00000308271 CDH9Q9ULB4 789 aa19.52■□□□□ 0.71
USP48-201ENST00000308271 SLC22A2O15244 555 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 SERPINI2O75830 405 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 SLC27A1Q6PCB7 646 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 ZNF781Q8N8C0 355 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 PTGR2Q8N8N7 351 aaPredicted RBP19.51■□□□□ 0.71
USP48-201ENST00000308271 SEPT8Q92599 483 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 DNAJC1Q96KC8 554 aaKnown RBP19.51■□□□□ 0.71
USP48-201ENST00000308271 GATA5Q9BWX5 397 aaPredicted RBP19.51■□□□□ 0.71
USP48-201ENST00000308271 CXorf21Q9HAI6 301 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 PRIM2P49643 509 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 NADK2Q4G0N4 442 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 BPIFB6Q8NFQ5 453 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 NTPCRQ9BSD7 190 aaKnown RBP19.51■□□□□ 0.71
USP48-201ENST00000308271 CRLS1Q9UJA2 301 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 B4GALT4O60513 344 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 PARNO95453 639 aaKnown RBP19.51■□□□□ 0.71
USP48-201ENST00000308271 CSH1P0DML2 217 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 CSH2P0DML3 217 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 UBA1P22314 1058 aaKnown RBP19.51■□□□□ 0.71
USP48-201ENST00000308271 CCNG1P51959 295 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 PEX6Q13608 980 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 PFKFB4Q16877 469 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 RNF219Q5W0B1 726 aaPredicted RBP19.51■□□□□ 0.71
USP48-201ENST00000308271 STAG3L4Q8TBR4 150 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 ACOX2Q99424 681 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 ROGDIQ9GZN7 287 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 PTPRHQ9HD43 1115 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 RCOR3Q9P2K3 495 aaPredicted RBP19.51■□□□□ 0.71
USP48-201ENST00000308271 EGFL7Q9UHF1 273 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 ATP6AP2A0A1C7CYW4 349 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 PAPSS1O43252 624 aaPredicted RBP19.51■□□□□ 0.71
USP48-201ENST00000308271 ATP6AP2O75787 350 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 LTFP02788 710 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 HGFP14210 728 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 SERPINH1P50454 418 aaKnown RBP19.51■□□□□ 0.71
USP48-201ENST00000308271 LSM12Q3MHD2 195 aaKnown RBP19.51■□□□□ 0.71
USP48-201ENST00000308271 SAMD7Q7Z3H4 446 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 AMER2Q8N7J2 671 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 SLC7A6OSQ96CW6 309 aaPredicted RBP19.51■□□□□ 0.71
USP48-201ENST00000308271 CSPG4P5Q96PW8 444 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 MUC3BQ9H195 1237 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 TMEM165Q9HC07 324 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 APOBEC3GQ9HC16 384 aaKnown RBP19.51■□□□□ 0.71
USP48-201ENST00000308271 PNPLA8Q9NP80 782 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 KLHL3Q9UH77 587 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 DSEQ9UL01 958 aa19.51■□□□□ 0.71
USP48-201ENST00000308271 LRRC37A3O60309 1634 aa19.5■□□□□ 0.71
USP48-201ENST00000308271 MYH2Q9UKX2 1941 aa19.5■□□□□ 0.71
USP48-201ENST00000308271 ERCC2P18074 760 aa19.5■□□□□ 0.71
USP48-201ENST00000308271 C10orf120Q5SQS8 335 aa19.5■□□□□ 0.71
USP48-201ENST00000308271 EGFLAMQ63HQ2 1017 aa19.5■□□□□ 0.71
USP48-201ENST00000308271 ZBTB46Q86UZ6 589 aa19.5■□□□□ 0.71
USP48-201ENST00000308271 PDSS2Q86YH6 399 aa19.5■□□□□ 0.71
USP48-201ENST00000308271 MTERF3Q96E29 417 aa19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms