RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 COPEO14579 308 aa17.13■□□□□ 0.33
LDLR-206ENST00000557958 ACSL4O60488 711 aa17.13■□□□□ 0.33
LDLR-206ENST00000557958 RB1P06400 928 aa17.13■□□□□ 0.33
LDLR-206ENST00000557958 OR1E1P30953 314 aa17.13■□□□□ 0.33
LDLR-206ENST00000557958 EPHB3P54753 998 aa17.13■□□□□ 0.33
LDLR-206ENST00000557958 MPP3Q13368 585 aa17.13■□□□□ 0.33
LDLR-206ENST00000557958 ITIH4Q14624 930 aa17.13■□□□□ 0.33
LDLR-206ENST00000557958 POLD3Q15054 466 aaPredicted RBP17.13■□□□□ 0.33
LDLR-206ENST00000557958 ALFQ53S48 1182 aa17.13■□□□□ 0.33
LDLR-206ENST00000557958 MARC1Q5VT66 337 aa17.13■□□□□ 0.33
LDLR-206ENST00000557958 PPP2R2DQ66LE6 453 aa17.13■□□□□ 0.33
LDLR-206ENST00000557958 LVRNQ6Q4G3 990 aa17.13■□□□□ 0.33
LDLR-206ENST00000557958 OTOP3Q7RTS5 596 aa17.13■□□□□ 0.33
LDLR-206ENST00000557958 RBM23Q86U06 439 aaKnown RBP17.13■□□□□ 0.33
LDLR-206ENST00000557958 TMEM135Q86UB9 458 aa17.13■□□□□ 0.33
LDLR-206ENST00000557958 ITIH5Q86UX2 942 aa17.13■□□□□ 0.33
LDLR-206ENST00000557958 CCDC117Q8IWD4 279 aaPredicted RBP17.13■□□□□ 0.33
LDLR-206ENST00000557958 TCP10LQ8TDR4 215 aa17.13■□□□□ 0.33
LDLR-206ENST00000557958 AZIN2Q96A70 460 aa17.13■□□□□ 0.33
LDLR-206ENST00000557958 ZNF669Q96BR6 464 aaPredicted RBP17.13■□□□□ 0.33
LDLR-206ENST00000557958 HMCESQ96FZ2 354 aa17.13■□□□□ 0.33
LDLR-206ENST00000557958 OXNAD1Q96HP4 312 aaPredicted RBP17.13■□□□□ 0.33
LDLR-206ENST00000557958 PLCD4Q9BRC7 762 aa17.13■□□□□ 0.33
LDLR-206ENST00000557958 NOL6Q9H6R4 1146 aaKnown RBP17.13■□□□□ 0.33
LDLR-206ENST00000557958 MKS1Q9NXB0 559 aa17.13■□□□□ 0.33
LDLR-206ENST00000557958 PLXNA4Q9HCM2 1894 aa17.13■□□□□ 0.33
LDLR-206ENST00000557958 GOLGA8RI6L899 631 aa17.12■□□□□ 0.33
LDLR-206ENST00000557958 PER2O15055 1255 aa17.12■□□□□ 0.33
LDLR-206ENST00000557958 HLA-DQB2P05538 268 aa17.12■□□□□ 0.33
LDLR-206ENST00000557958 PYGBP11216 843 aa17.12■□□□□ 0.33
LDLR-206ENST00000557958 ALADP13716 330 aa17.12■□□□□ 0.33
LDLR-206ENST00000557958 HMGA1P17096 107 aaKnown RBP17.12■□□□□ 0.33
LDLR-206ENST00000557958 TIFABQ6ZNK6 161 aa17.12■□□□□ 0.33
LDLR-206ENST00000557958 PIGWQ7Z7B1 504 aa17.12■□□□□ 0.33
LDLR-206ENST00000557958 TCEAL8Q8IYN2 117 aa17.12■□□□□ 0.33
LDLR-206ENST00000557958 PTCD2Q8WV60 388 aaKnown RBP17.12■□□□□ 0.33
LDLR-206ENST00000557958 IGSF8Q969P0 613 aa17.12■□□□□ 0.33
LDLR-206ENST00000557958 SERAC1Q96JX3 654 aa17.12■□□□□ 0.33
LDLR-206ENST00000557958 CPNE1Q99829 537 aa17.12■□□□□ 0.33
LDLR-206ENST00000557958 DDX50Q9BQ39 737 aaKnown RBP17.12■□□□□ 0.33
LDLR-206ENST00000557958 TRIM56Q9BRZ2 755 aaKnown RBP17.12■□□□□ 0.33
LDLR-206ENST00000557958 VPS45Q9NRW7 570 aa17.12■□□□□ 0.33
LDLR-206ENST00000557958 FGFR1OP2Q9NVK5 253 aa17.12■□□□□ 0.33
LDLR-206ENST00000557958 UBP1Q9NZI7 540 aa17.12■□□□□ 0.33
LDLR-206ENST00000557958 SOX13Q9UN79 622 aa17.12■□□□□ 0.33
LDLR-206ENST00000557958 CNTN5O94779 1100 aa17.12■□□□□ 0.33
LDLR-206ENST00000557958 GLUD1P00367 558 aa17.12■□□□□ 0.33
LDLR-206ENST00000557958 IL10RBQ08334 325 aa17.12■□□□□ 0.33
LDLR-206ENST00000557958 C5orf22Q49AR2 442 aa17.12■□□□□ 0.33
LDLR-206ENST00000557958 DNAJB7Q7Z6W7 309 aaPredicted RBP17.12■□□□□ 0.33
LDLR-206ENST00000557958 LGI2Q8N0V4 545 aa17.12■□□□□ 0.33
LDLR-206ENST00000557958 KREMEN2Q8NCW0 462 aa17.12■□□□□ 0.33
LDLR-206ENST00000557958 IPMKQ8NFU5 416 aa17.12■□□□□ 0.33
LDLR-206ENST00000557958 ACMSDQ8TDX5 336 aa17.12■□□□□ 0.33
LDLR-206ENST00000557958 KLF6Q99612 283 aaPredicted RBP17.12■□□□□ 0.33
LDLR-206ENST00000557958 ELAC2Q9BQ52 826 aaKnown RBP17.12■□□□□ 0.33
LDLR-206ENST00000557958 SLC25A51Q9H1U9 297 aa17.12■□□□□ 0.33
LDLR-206ENST00000557958 VPS11Q9H270 941 aa17.12■□□□□ 0.33
LDLR-206ENST00000557958 SLC28A3Q9HAS3 691 aa17.12■□□□□ 0.33
LDLR-206ENST00000557958 NSMCE4AQ9NXX6 385 aa17.12■□□□□ 0.33
LDLR-206ENST00000557958 SHROOM3Q8TF72 1996 aa17.11■□□□□ 0.33
LDLR-206ENST00000557958 COCHO43405 550 aa17.11■□□□□ 0.33
LDLR-206ENST00000557958 ATP9BO43861 1147 aa17.11■□□□□ 0.33
LDLR-206ENST00000557958 LRG1P02750 347 aa17.11■□□□□ 0.33
LDLR-206ENST00000557958 TAC1P20366 129 aa17.11■□□□□ 0.33
LDLR-206ENST00000557958 CCNFP41002 786 aa17.11■□□□□ 0.33
LDLR-206ENST00000557958 KCNQ1P51787 676 aa17.11■□□□□ 0.33
LDLR-206ENST00000557958 ERVK-21P61565 698 aa17.11■□□□□ 0.33
LDLR-206ENST00000557958 UBE3AQ05086 875 aa17.11■□□□□ 0.33
LDLR-206ENST00000557958 TNK2Q07912 1038 aa17.11■□□□□ 0.33
LDLR-206ENST00000557958 CAMK1Q14012 370 aa17.11■□□□□ 0.33
LDLR-206ENST00000557958 SLC1A5Q15758 541 aa17.11■□□□□ 0.33
LDLR-206ENST00000557958 TTC31Q49AM3 519 aaPredicted RBP17.11■□□□□ 0.33
LDLR-206ENST00000557958 ANKRD20A4Q4UJ75 823 aa17.11■□□□□ 0.33
LDLR-206ENST00000557958 NADSYN1Q6IA69 706 aa17.11■□□□□ 0.33
LDLR-206ENST00000557958 POTEHQ6S545 545 aa17.11■□□□□ 0.33
LDLR-206ENST00000557958 PACS1Q6VY07 963 aa17.11■□□□□ 0.33
LDLR-206ENST00000557958 SPATA22Q8NHS9 363 aa17.11■□□□□ 0.33
LDLR-206ENST00000557958 ATP2A3Q93084 1043 aa17.11■□□□□ 0.33
LDLR-206ENST00000557958 PABPC5Q96DU9 382 aaKnown RBP17.11■□□□□ 0.33
LDLR-206ENST00000557958 PITPNM3Q9BZ71 974 aa17.11■□□□□ 0.33
LDLR-206ENST00000557958 NUP205Q92621 2012 aa17.1■□□□□ 0.33
LDLR-206ENST00000557958 C8AP07357 584 aa17.1■□□□□ 0.33
LDLR-206ENST00000557958 GP5P40197 560 aa17.1■□□□□ 0.33
LDLR-206ENST00000557958 NEK3P51956 506 aa17.1■□□□□ 0.33
LDLR-206ENST00000557958 CDH4P55283 916 aa17.1■□□□□ 0.33
LDLR-206ENST00000557958 OLIG2Q13516 323 aa17.1■□□□□ 0.33
LDLR-206ENST00000557958 SERINC3Q13530 473 aa17.1■□□□□ 0.33
LDLR-206ENST00000557958 PABPC1LQ4VXU2 614 aaKnown RBP17.1■□□□□ 0.33
LDLR-206ENST00000557958 PCID2Q5JVF3 399 aa17.1■□□□□ 0.33
LDLR-206ENST00000557958 CERCAMQ5T4B2 595 aa17.1■□□□□ 0.33
LDLR-206ENST00000557958 GRTP1Q5TC63 336 aa17.1■□□□□ 0.33
LDLR-206ENST00000557958 MROH9Q5TGP6 573 aa17.1■□□□□ 0.33
LDLR-206ENST00000557958 BBS5Q8N3I7 341 aa17.1■□□□□ 0.33
LDLR-206ENST00000557958 PPHLN1Q8NEY8 458 aaKnown RBP17.1■□□□□ 0.33
LDLR-206ENST00000557958 ZNF599Q96NL3 588 aa17.1■□□□□ 0.33
LDLR-206ENST00000557958 SRPK1Q96SB4 655 aaKnown RBP17.1■□□□□ 0.33
LDLR-206ENST00000557958 APOL2Q9BQE5 337 aa17.1■□□□□ 0.33
LDLR-206ENST00000557958 FICDQ9BVA6 458 aa17.1■□□□□ 0.33
LDLR-206ENST00000557958 KIFC1Q9BW19 673 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms