RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 HECTD1Q9ULT8 2610 aa17.36■□□□□ 0.37
VPS29-204ENST00000548259 TP53BP1Q12888 1972 aaPredicted RBP17.36■□□□□ 0.37
VPS29-204ENST00000548259 ARID1BQ8NFD5 2236 aaPredicted RBP17.36■□□□□ 0.37
VPS29-204ENST00000548259 CPED1A4D0V7 1026 aa17.35■□□□□ 0.37
VPS29-204ENST00000548259 MED7O43513 233 aa17.35■□□□□ 0.37
VPS29-204ENST00000548259 CLDN11O75508 207 aa17.35■□□□□ 0.37
VPS29-204ENST00000548259 TCEA3O75764 348 aa17.35■□□□□ 0.37
VPS29-204ENST00000548259 RECQLP46063 649 aaPredicted RBP17.35■□□□□ 0.37
VPS29-204ENST00000548259 RPIAP49247 311 aa17.35■□□□□ 0.37
VPS29-204ENST00000548259 NUMBP49757 651 aa17.35■□□□□ 0.37
VPS29-204ENST00000548259 CSRP3P50461 194 aa17.35■□□□□ 0.37
VPS29-204ENST00000548259 TAS2R38P59533 333 aa17.35■□□□□ 0.37
VPS29-204ENST00000548259 PIP5KL1Q5T9C9 394 aa17.35■□□□□ 0.37
VPS29-204ENST00000548259 CXorf57Q6NSI4 855 aaKnown RBP17.35■□□□□ 0.37
VPS29-204ENST00000548259 XKR5Q6UX68 686 aa17.35■□□□□ 0.37
VPS29-204ENST00000548259 Q6ZSR6 202 aa17.35■□□□□ 0.37
VPS29-204ENST00000548259 ABI3BPQ7Z7G0 1075 aa17.35■□□□□ 0.37
VPS29-204ENST00000548259 ZSCAN30Q86W11 494 aa17.35■□□□□ 0.37
VPS29-204ENST00000548259 CIR1Q86X95 450 aaPredicted RBP17.35■□□□□ 0.37
VPS29-204ENST00000548259 SMYD4Q8IYR2 804 aaPredicted RBP17.35■□□□□ 0.37
VPS29-204ENST00000548259 ATP11CQ8NB49 1132 aa17.35■□□□□ 0.37
VPS29-204ENST00000548259 TMIEQ8NEW7 156 aa17.35■□□□□ 0.37
VPS29-204ENST00000548259 SLC35C1Q96A29 364 aa17.35■□□□□ 0.37
VPS29-204ENST00000548259 C2orf49Q9BVC5 232 aaPredicted RBP17.35■□□□□ 0.37
VPS29-204ENST00000548259 MUC3BQ9H195 1237 aa17.35■□□□□ 0.37
VPS29-204ENST00000548259 HS3ST3A1Q9Y663 406 aa17.35■□□□□ 0.37
VPS29-204ENST00000548259 FAM237AA0A1B0GTK4 181 aa17.34■□□□□ 0.37
VPS29-204ENST00000548259 GIMD1P0DJR0 217 aa17.34■□□□□ 0.37
VPS29-204ENST00000548259 CHRNA3P32297 505 aa17.34■□□□□ 0.37
VPS29-204ENST00000548259 GPD2P43304 727 aa17.34■□□□□ 0.37
VPS29-204ENST00000548259 RPL34P49207 117 aaKnown RBP17.34■□□□□ 0.37
VPS29-204ENST00000548259 FMO5P49326 533 aa17.34■□□□□ 0.37
VPS29-204ENST00000548259 LRRC63Q05C16 580 aa17.34■□□□□ 0.37
VPS29-204ENST00000548259 MEA1Q16626 185 aa17.34■□□□□ 0.37
VPS29-204ENST00000548259 HSCBQ8IWL3 235 aa17.34■□□□□ 0.37
VPS29-204ENST00000548259 PRMT1Q99873 361 aaKnown RBP17.34■□□□□ 0.37
VPS29-204ENST00000548259 FZD3Q9NPG1 666 aa17.34■□□□□ 0.37
VPS29-204ENST00000548259 DDIT4Q9NX09 232 aa17.34■□□□□ 0.37
VPS29-204ENST00000548259 SALL4Q9UJQ4 1053 aa17.34■□□□□ 0.37
VPS29-204ENST00000548259 HS3ST2Q9Y278 367 aa17.34■□□□□ 0.37
VPS29-204ENST00000548259 SSUH2Q9Y2M2 353 aa17.34■□□□□ 0.37
VPS29-204ENST00000548259 RNF225M0QZC1 329 aaPredicted RBP17.33■□□□□ 0.36
VPS29-204ENST00000548259 PMM2O15305 246 aa17.33■□□□□ 0.36
VPS29-204ENST00000548259 IGLV3-25P01717 112 aa17.33■□□□□ 0.36
VPS29-204ENST00000548259 CSF2P04141 144 aa17.33■□□□□ 0.36
VPS29-204ENST00000548259 RABIFP47224 123 aa17.33■□□□□ 0.36
VPS29-204ENST00000548259 CLCN6P51797 869 aa17.33■□□□□ 0.36
VPS29-204ENST00000548259 CLDN2P57739 230 aa17.33■□□□□ 0.36
VPS29-204ENST00000548259 RPS21P63220 83 aaKnown RBP17.33■□□□□ 0.36
VPS29-204ENST00000548259 NR0B2Q15466 257 aa17.33■□□□□ 0.36
VPS29-204ENST00000548259 CDKN3Q16667 212 aa17.33■□□□□ 0.36
VPS29-204ENST00000548259 ZSCAN23Q3MJ62 389 aa17.33■□□□□ 0.36
VPS29-204ENST00000548259 KIAA1161Q6NSJ0 714 aa17.33■□□□□ 0.36
VPS29-204ENST00000548259 FBXL22Q6P050 247 aa17.33■□□□□ 0.36
VPS29-204ENST00000548259 FOXR1Q6PIV2 292 aa17.33■□□□□ 0.36
VPS29-204ENST00000548259 KYAT3Q6YP21 454 aaKnown RBP17.33■□□□□ 0.36
VPS29-204ENST00000548259 GCNT7Q6ZNI0 430 aa17.33■□□□□ 0.36
VPS29-204ENST00000548259 ERN2Q76MJ5 926 aaKnown RBP17.33■□□□□ 0.36
VPS29-204ENST00000548259 EFL1Q7Z2Z2 1120 aaKnown RBP17.33■□□□□ 0.36
VPS29-204ENST00000548259 PARGQ86W56 976 aa17.33■□□□□ 0.36
VPS29-204ENST00000548259 ZNF548Q8NEK5 533 aaPredicted RBP17.33■□□□□ 0.36
VPS29-204ENST00000548259 WDR36Q8NI36 951 aaKnown RBP17.33■□□□□ 0.36
VPS29-204ENST00000548259 BTN2A2Q8WVV5 523 aa17.33■□□□□ 0.36
VPS29-204ENST00000548259 NAT6Q93015 286 aa17.33■□□□□ 0.36
VPS29-204ENST00000548259 SNX21Q969T3 373 aa17.33■□□□□ 0.36
VPS29-204ENST00000548259 ATXN7L3BQ96GX2 97 aa17.33■□□□□ 0.36
VPS29-204ENST00000548259 FEM1CQ96JP0 617 aa17.33■□□□□ 0.36
VPS29-204ENST00000548259 IL12RB2Q99665 862 aa17.33■□□□□ 0.36
VPS29-204ENST00000548259 ZSWIM1Q9BR11 485 aa17.33■□□□□ 0.36
VPS29-204ENST00000548259 HDAC8Q9BY41 377 aa17.33■□□□□ 0.36
VPS29-204ENST00000548259 WDR70Q9NW82 654 aa17.33■□□□□ 0.36
VPS29-204ENST00000548259 P4HA2O15460 535 aa17.32■□□□□ 0.36
VPS29-204ENST00000548259 AQP9O43315 295 aa17.32■□□□□ 0.36
VPS29-204ENST00000548259 NEBLO76041 1014 aa17.32■□□□□ 0.36
VPS29-204ENST00000548259 GLI1P08151 1106 aa17.32■□□□□ 0.36
VPS29-204ENST00000548259 MYF5P13349 255 aa17.32■□□□□ 0.36
VPS29-204ENST00000548259 KRT5P13647 590 aa17.32■□□□□ 0.36
VPS29-204ENST00000548259 NME1P15531 152 aaKnown RBP17.32■□□□□ 0.36
VPS29-204ENST00000548259 TGM2P21980 687 aa17.32■□□□□ 0.36
VPS29-204ENST00000548259 PRCPP42785 496 aa17.32■□□□□ 0.36
VPS29-204ENST00000548259 GCNT1Q02742 428 aa17.32■□□□□ 0.36
VPS29-204ENST00000548259 MAPK8IP2Q13387 824 aaPredicted RBP17.32■□□□□ 0.36
VPS29-204ENST00000548259 STIM1Q13586 685 aa17.32■□□□□ 0.36
VPS29-204ENST00000548259 ZNF542PQ5EBM4 170 aa17.32■□□□□ 0.36
VPS29-204ENST00000548259 KIAA1614Q5VZ46 1190 aa17.32■□□□□ 0.36
VPS29-204ENST00000548259 SLC22A18ASQ8N1D0 253 aa17.32■□□□□ 0.36
VPS29-204ENST00000548259 ALG14Q96F25 216 aa17.32■□□□□ 0.36
VPS29-204ENST00000548259 CCNL2Q96S94 520 aaPredicted RBP17.32■□□□□ 0.36
VPS29-204ENST00000548259 ARHGAP9Q9BRR9 750 aa17.32■□□□□ 0.36
VPS29-204ENST00000548259 SLC4A5Q9BY07 1137 aa17.32■□□□□ 0.36
VPS29-204ENST00000548259 SLC17A9Q9BYT1 436 aa17.32■□□□□ 0.36
VPS29-204ENST00000548259 VANGL2Q9ULK5 521 aa17.32■□□□□ 0.36
VPS29-204ENST00000548259 SYNJ2BP-COX16A0A087WUM0 186 aa17.31■□□□□ 0.36
VPS29-204ENST00000548259 LY6G6EA0A0G2JKS1 128 aa17.31■□□□□ 0.36
VPS29-204ENST00000548259 SPTY2D1-AS1A0A0U1RR47 76 aa17.31■□□□□ 0.36
VPS29-204ENST00000548259 A0A1W2PQ27 194 aa17.31■□□□□ 0.36
VPS29-204ENST00000548259 A0A1W2PQ64 194 aa17.31■□□□□ 0.36
VPS29-204ENST00000548259 EME2A4GXA9 379 aaPredicted RBP17.31■□□□□ 0.36
VPS29-204ENST00000548259 E5RJQ4 531 aa17.31■□□□□ 0.36
VPS29-204ENST00000548259 FPGTO14772 594 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms