RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 CCNG1P51959 295 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 SEC24CP53992 1094 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 SUMO3P55854 103 aaPredicted RBP4.72□□□□□ -1.65
SF3B1-202ENST00000409915 HDAC4P56524 1084 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 GSDMDP57764 484 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 POLR2FP61218 127 aaKnown RBP4.72□□□□□ -1.65
SF3B1-202ENST00000409915 HTRA4P83105 476 aaPredicted RBP4.72□□□□□ -1.65
SF3B1-202ENST00000409915 MC1RQ01726 317 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 POU4F1Q01851 419 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 CREB5Q02930 508 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 C19orf57Q0VDD7 668 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 CHAF1BQ13112 559 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 DMP1Q13316 513 aaPredicted RBP4.72□□□□□ -1.65
SF3B1-202ENST00000409915 RIPK1Q13546 671 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 SNW1Q13573 536 aaKnown RBP4.72□□□□□ -1.65
SF3B1-202ENST00000409915 CUL3Q13618 768 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 TUBB2AQ13885 445 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 SLBPQ14493 270 aaKnown RBP eCLIP4.72□□□□□ -1.65
SF3B1-202ENST00000409915 PPA1Q15181 289 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 PITRM1Q5JRX3 1037 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 CLLU1OSQ5K130 101 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 CEP85LQ5SZL2 805 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 EMC10Q5UCC4 262 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 RRAGBQ5VZM2 374 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 RESP18Q5W5W9 173 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 SLC24A5Q71RS6 500 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 BEND5Q7L4P6 421 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 R3HCC1LQ7Z5L2 792 aaKnown RBP4.72□□□□□ -1.65
SF3B1-202ENST00000409915 PRPF39Q86UA1 669 aaKnown RBP4.72□□□□□ -1.65
SF3B1-202ENST00000409915 SLC9B2Q86UD5 537 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 FAM35AQ86V20 835 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 TSPYL5Q86VY4 417 aaPredicted RBP4.72□□□□□ -1.65
SF3B1-202ENST00000409915 SFR1Q86XK3 245 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 ECHDC2Q86YB7 292 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 ZBTB8OSQ8IWT0 167 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 LRRC43Q8N309 656 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 KCTD6Q8NC69 237 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 RCBTB1Q8NDN9 531 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 CNNM3Q8NE01 707 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 UTP15Q8TED0 518 aaKnown RBP4.72□□□□□ -1.65
SF3B1-202ENST00000409915 FNIP1Q8TF40 1166 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 TSPEARQ8WU66 669 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 ARNTL2Q8WYA1 636 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 TTC9Q92623 222 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 TAF4BQ92750 862 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 KIFAP3Q92845 792 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 NACC2Q96BF6 587 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 MTFMTQ96DP5 389 aaKnown RBP4.72□□□□□ -1.65
SF3B1-202ENST00000409915 IQCDQ96DY2 449 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 SLC35A4Q96G79 324 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 DHTKD1Q96HY7 919 aaPredicted RBP4.72□□□□□ -1.65
SF3B1-202ENST00000409915 IFT74Q96LB3 600 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 CCDC114Q96M63 670 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 RAD9AQ99638 391 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 KCNJ15Q99712 375 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 TUBB2BQ9BVA1 445 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 MAK16Q9BXY0 300 aaKnown RBP4.72□□□□□ -1.65
SF3B1-202ENST00000409915 ACE2Q9BYF1 805 aaPredicted RBP4.72□□□□□ -1.65
SF3B1-202ENST00000409915 PARD6BQ9BYG5 372 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 FGFBP2Q9BYJ0 223 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 PRDM14Q9GZV8 571 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 SMG9Q9H0W8 520 aaKnown RBP4.72□□□□□ -1.65
SF3B1-202ENST00000409915 IKZF4Q9H2S9 585 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 SEMA4AQ9H3S1 761 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 SEMA6BQ9H3T3 888 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 NXF3Q9H4D5 531 aaKnown RBP4.72□□□□□ -1.65
SF3B1-202ENST00000409915 PDZD7Q9H5P4 517 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 SYNCQ9H7C4 482 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 ACTR5Q9H9F9 607 aaPredicted RBP4.72□□□□□ -1.65
SF3B1-202ENST00000409915 SLC28A3Q9HAS3 691 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 PCDH18Q9HCL0 1135 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 SLC39A2Q9NP94 309 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 ACSS2Q9NR19 701 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 PAPOLBQ9NRJ5 636 aaKnown RBP4.72□□□□□ -1.65
SF3B1-202ENST00000409915 RGS18Q9NS28 235 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 FAM105AQ9NUU6 356 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 TBC1D7Q9P0N9 293 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 USP36Q9P275 1121 aaKnown RBP4.72□□□□□ -1.65
SF3B1-202ENST00000409915 IMPACTQ9P2X3 320 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 TUBGCP4Q9UGJ1 667 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 DPP7Q9UHL4 492 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 RCOR1Q9UKL0 485 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 CFAP45Q9UL16 551 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 TMCO1Q9UM00 188 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 TMEM5Q9Y2B1 443 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 ASB3Q9Y575 518 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 PCDHB7Q9Y5E2 793 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 CFAP20Q9Y6A4 193 aaKnown RBP4.72□□□□□ -1.65
SF3B1-202ENST00000409915 COL4A4P53420 1690 aaPredicted RBP4.72□□□□□ -1.65
SF3B1-202ENST00000409915 CNTNAP2Q9UHC6 1331 aa4.72□□□□□ -1.65
SF3B1-202ENST00000409915 SPTBN5Q9NRC6 3674 aaKnown RBP4.71□□□□□ -1.65
SF3B1-202ENST00000409915 A0A0U1RQF3 1178 aa4.71□□□□□ -1.66
SF3B1-202ENST00000409915 C2orf71A6NGG8 1288 aa4.71□□□□□ -1.66
SF3B1-202ENST00000409915 NT5C1B-RDH14C9J2C7 533 aa4.71□□□□□ -1.66
SF3B1-202ENST00000409915 H3BUI4 141 aa4.71□□□□□ -1.66
SF3B1-202ENST00000409915 PLOD2O00469 737 aa4.71□□□□□ -1.66
SF3B1-202ENST00000409915 SCDO00767 359 aa4.71□□□□□ -1.66
SF3B1-202ENST00000409915 AURKAO14965 403 aa4.71□□□□□ -1.66
SF3B1-202ENST00000409915 PIP5K1BO14986 540 aa4.71□□□□□ -1.66
SF3B1-202ENST00000409915 SLC16A6O15403 523 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms