RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 LY6DQ14210 128 aa17.4■□□□□ 0.38
VPS29-204ENST00000548259 IGF2-ASQ6U949 168 aa17.4■□□□□ 0.38
VPS29-204ENST00000548259 TAC4Q86UU9 113 aa17.4■□□□□ 0.38
VPS29-204ENST00000548259 CCAR2Q8N163 923 aaKnown RBP17.4■□□□□ 0.38
VPS29-204ENST00000548259 TMEM145Q8NBT3 493 aa17.4■□□□□ 0.38
VPS29-204ENST00000548259 TPCN2Q8NHX9 752 aa17.4■□□□□ 0.38
VPS29-204ENST00000548259 TFAP2BQ92481 460 aa17.4■□□□□ 0.38
VPS29-204ENST00000548259 APOLD1Q96LR9 279 aa17.4■□□□□ 0.38
VPS29-204ENST00000548259 NT5C1BQ96P26 610 aa17.4■□□□□ 0.38
VPS29-204ENST00000548259 SRRTQ9BXP5 876 aaKnown RBP17.4■□□□□ 0.38
VPS29-204ENST00000548259 OSBPL2Q9H1P3 480 aa17.4■□□□□ 0.38
VPS29-204ENST00000548259 UCKL1Q9NWZ5 548 aa17.4■□□□□ 0.38
VPS29-204ENST00000548259 ARMCX3Q9UH62 379 aaPredicted RBP17.4■□□□□ 0.38
VPS29-204ENST00000548259 HPSEQ9Y251 543 aa17.4■□□□□ 0.38
VPS29-204ENST00000548259 SPTA1P02549 2419 aa17.39■□□□□ 0.37
VPS29-204ENST00000548259 NAV2Q8IVL1 2488 aa17.39■□□□□ 0.37
VPS29-204ENST00000548259 A0A1W2PQU0 124 aa17.39■□□□□ 0.37
VPS29-204ENST00000548259 KCNU1A8MYU2 1149 aa17.39■□□□□ 0.37
VPS29-204ENST00000548259 H3BM21 787 aa17.39■□□□□ 0.37
VPS29-204ENST00000548259 SCAMP1O15126 338 aa17.39■□□□□ 0.37
VPS29-204ENST00000548259 WISP1O95388 367 aa17.39■□□□□ 0.37
VPS29-204ENST00000548259 DLG2Q15700 870 aa17.39■□□□□ 0.37
VPS29-204ENST00000548259 ZC3H12AQ5D1E8 599 aaKnown RBP17.39■□□□□ 0.37
VPS29-204ENST00000548259 HORMAD1Q86X24 394 aa17.39■□□□□ 0.37
VPS29-204ENST00000548259 TTC9Q92623 222 aa17.39■□□□□ 0.37
VPS29-204ENST00000548259 SPATA32Q96LK8 384 aa17.39■□□□□ 0.37
VPS29-204ENST00000548259 MED15Q96RN5 788 aa17.39■□□□□ 0.37
VPS29-204ENST00000548259 MYOCQ99972 504 aa17.39■□□□□ 0.37
VPS29-204ENST00000548259 POPDC2Q9HBU9 364 aa17.39■□□□□ 0.37
VPS29-204ENST00000548259 RMND1Q9NWS8 449 aa17.39■□□□□ 0.37
VPS29-204ENST00000548259 SARDHQ9UL12 918 aa17.39■□□□□ 0.37
VPS29-204ENST00000548259 HEMK1Q9Y5R4 338 aaPredicted RBP17.39■□□□□ 0.37
VPS29-204ENST00000548259 MYO18BQ8IUG5 2567 aa17.38■□□□□ 0.37
VPS29-204ENST00000548259 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.38■□□□□ 0.37
VPS29-204ENST00000548259 A6NNZ2 444 aa17.38■□□□□ 0.37
VPS29-204ENST00000548259 BNIP3LO60238 219 aa17.38■□□□□ 0.37
VPS29-204ENST00000548259 FYNP06241 537 aa17.38■□□□□ 0.37
VPS29-204ENST00000548259 PRR29P0C7W0 189 aa17.38■□□□□ 0.37
VPS29-204ENST00000548259 PRLRP16471 622 aa17.38■□□□□ 0.37
VPS29-204ENST00000548259 BRD2P25440 801 aaKnown RBP17.38■□□□□ 0.37
VPS29-204ENST00000548259 METAP1P53582 386 aa17.38■□□□□ 0.37
VPS29-204ENST00000548259 ZNF177Q13360 481 aaPredicted RBP17.38■□□□□ 0.37
VPS29-204ENST00000548259 ISXQ2M1V0 245 aa17.38■□□□□ 0.37
VPS29-204ENST00000548259 CCDC81Q6ZN84 652 aa17.38■□□□□ 0.37
VPS29-204ENST00000548259 PPM1KQ8N3J5 372 aa17.38■□□□□ 0.37
VPS29-204ENST00000548259 ARL14Q8N4G2 192 aa17.38■□□□□ 0.37
VPS29-204ENST00000548259 UBR7Q8N806 425 aa17.38■□□□□ 0.37
VPS29-204ENST00000548259 IFI44Q8TCB0 444 aa17.38■□□□□ 0.37
VPS29-204ENST00000548259 METTL14Q9HCE5 456 aaKnown RBP17.38■□□□□ 0.37
VPS29-204ENST00000548259 ASCL3Q9NQ33 180 aa17.38■□□□□ 0.37
VPS29-204ENST00000548259 DNAJC28Q9NX36 388 aa17.38■□□□□ 0.37
VPS29-204ENST00000548259 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.38■□□□□ 0.37
VPS29-204ENST00000548259 XPO7Q9UIA9 1087 aaKnown RBP17.38■□□□□ 0.37
VPS29-204ENST00000548259 VPS28Q9UK41 221 aa17.38■□□□□ 0.37
VPS29-204ENST00000548259 CA5BQ9Y2D0 317 aa17.38■□□□□ 0.37
VPS29-204ENST00000548259 K7ENP7 123 aa17.37■□□□□ 0.37
VPS29-204ENST00000548259 KPNA3O00505 521 aaPredicted RBP17.37■□□□□ 0.37
VPS29-204ENST00000548259 GABBR2O75899 941 aa17.37■□□□□ 0.37
VPS29-204ENST00000548259 PCDH8O95206 1070 aa17.37■□□□□ 0.37
VPS29-204ENST00000548259 TRUB2O95900 331 aaKnown RBP17.37■□□□□ 0.37
VPS29-204ENST00000548259 CCR1P32246 355 aa17.37■□□□□ 0.37
VPS29-204ENST00000548259 MLLT3P42568 568 aaPredicted RBP17.37■□□□□ 0.37
VPS29-204ENST00000548259 NDUFA8P51970 172 aa17.37■□□□□ 0.37
VPS29-204ENST00000548259 YWHAZP63104 245 aaKnown RBP17.37■□□□□ 0.37
VPS29-204ENST00000548259 KRT83P78385 493 aa17.37■□□□□ 0.37
VPS29-204ENST00000548259 C3orf38Q5JPI3 329 aa17.37■□□□□ 0.37
VPS29-204ENST00000548259 ZCCHC8Q6NZY4 707 aaKnown RBP17.37■□□□□ 0.37
VPS29-204ENST00000548259 INO80CQ6PI98 192 aaPredicted RBP17.37■□□□□ 0.37
VPS29-204ENST00000548259 KRBA2Q6ZNG9 492 aa17.37■□□□□ 0.37
VPS29-204ENST00000548259 Q6ZVU0 165 aa17.37■□□□□ 0.37
VPS29-204ENST00000548259 OR13H1Q8NG92 308 aa17.37■□□□□ 0.37
VPS29-204ENST00000548259 GLMNQ92990 594 aa17.37■□□□□ 0.37
VPS29-204ENST00000548259 PPP1R16AQ96I34 528 aa17.37■□□□□ 0.37
VPS29-204ENST00000548259 SLC46A1Q96NT5 459 aa17.37■□□□□ 0.37
VPS29-204ENST00000548259 RPRD1AQ96P16 312 aaPredicted RBP17.37■□□□□ 0.37
VPS29-204ENST00000548259 FAM117AQ9C073 453 aa17.37■□□□□ 0.37
VPS29-204ENST00000548259 SEMA4CQ9C0C4 833 aa17.37■□□□□ 0.37
VPS29-204ENST00000548259 SATB2Q9UPW6 733 aa17.37■□□□□ 0.37
VPS29-204ENST00000548259 PCDHGA8Q9Y5G5 932 aa17.37■□□□□ 0.37
VPS29-204ENST00000548259 MYLKQ15746 1914 aa17.37■□□□□ 0.37
VPS29-204ENST00000548259 K7ESM1 405 aa17.36■□□□□ 0.37
VPS29-204ENST00000548259 LZTS3O60299 673 aaPredicted RBP17.36■□□□□ 0.37
VPS29-204ENST00000548259 PRNPP04156 253 aa17.36■□□□□ 0.37
VPS29-204ENST00000548259 KRT85P78386 507 aa17.36■□□□□ 0.37
VPS29-204ENST00000548259 CDK17Q00537 523 aa17.36■□□□□ 0.37
VPS29-204ENST00000548259 ZNF284Q2VY69 593 aa17.36■□□□□ 0.37
VPS29-204ENST00000548259 SYPL2Q5VXT5 272 aa17.36■□□□□ 0.37
VPS29-204ENST00000548259 RBM44Q6ZP01 1051 aaKnown RBP17.36■□□□□ 0.37
VPS29-204ENST00000548259 PRICKLE2Q7Z3G6 844 aa17.36■□□□□ 0.37
VPS29-204ENST00000548259 PTAR1Q7Z6K3 402 aaPredicted RBP17.36■□□□□ 0.37
VPS29-204ENST00000548259 SH2D3CQ8N5H7 860 aa17.36■□□□□ 0.37
VPS29-204ENST00000548259 WDR48Q8TAF3 677 aa17.36■□□□□ 0.37
VPS29-204ENST00000548259 STK32AQ8WU08 396 aa17.36■□□□□ 0.37
VPS29-204ENST00000548259 KLK6Q92876 244 aa17.36■□□□□ 0.37
VPS29-204ENST00000548259 FEM1AQ9BSK4 669 aa17.36■□□□□ 0.37
VPS29-204ENST00000548259 GTPBP4Q9BZE4 634 aaKnown RBP17.36■□□□□ 0.37
VPS29-204ENST00000548259 THAP9Q9H5L6 903 aa17.36■□□□□ 0.37
VPS29-204ENST00000548259 FAM204AQ9H8W3 233 aa17.36■□□□□ 0.37
VPS29-204ENST00000548259 IPO11Q9UI26 975 aaKnown RBP17.36■□□□□ 0.37
VPS29-204ENST00000548259 CSNK1G3Q9Y6M4 447 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms