RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 CPA5Q8WXQ8 436 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 SAAL1Q96ER3 474 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 TSPAN17Q96FV3 270 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 RUFY1Q96T51 708 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 MLPHQ9BV36 600 aaPredicted RBP6.54□□□□□ -1.36
VPS29-210ENST00000552130 TRIM7Q9C029 511 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 TTYH1Q9H313 450 aaPredicted RBP6.54□□□□□ -1.36
VPS29-210ENST00000552130 STN1Q9H668 368 aaKnown RBP6.54□□□□□ -1.36
VPS29-210ENST00000552130 SH2D4AQ9H788 454 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 ZBTB26Q9HCK0 441 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 ZNF304Q9HCX3 659 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 SLAMF7Q9NQ25 335 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 BEX4Q9NWD9 120 aaPredicted RBP6.54□□□□□ -1.36
VPS29-210ENST00000552130 CHCHD3Q9NX63 227 aaKnown RBP6.54□□□□□ -1.36
VPS29-210ENST00000552130 KCND2Q9NZV8 630 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 CWC15Q9P013 229 aaKnown RBP6.54□□□□□ -1.36
VPS29-210ENST00000552130 SEC63Q9UGP8 760 aaKnown RBP6.54□□□□□ -1.36
VPS29-210ENST00000552130 ZDHHC8Q9ULC8 765 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 CAPN11Q9UMQ6 739 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 PPIEQ9UNP9 301 aaKnown RBP6.54□□□□□ -1.36
VPS29-210ENST00000552130 RPH3AQ9Y2J0 694 aaPredicted RBP6.54□□□□□ -1.36
VPS29-210ENST00000552130 GDAQ9Y2T3 454 aa6.54□□□□□ -1.36
VPS29-210ENST00000552130 MRPL11Q9Y3B7 192 aaKnown RBP6.54□□□□□ -1.36
VPS29-210ENST00000552130 PTRH2Q9Y3E5 179 aaKnown RBP6.54□□□□□ -1.36
VPS29-210ENST00000552130 ZNF804BA4D1E1 1349 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 MYBBP1AQ9BQG0 1328 aaKnown RBP6.53□□□□□ -1.36
VPS29-210ENST00000552130 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.53□□□□□ -1.36
VPS29-210ENST00000552130 FAM237BA0A1B0GVD1 139 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 J3KTA2 159 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 VWA5AO00534 786 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 CA12O43570 354 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 EPN2O95208 641 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 ALPPP05187 535 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 TUBBP07437 444 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 CYP21A2P08686 494 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 ALPPL2P10696 532 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 ZNF20P17024 532 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 PRKCHP24723 683 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 PTPN3P26045 913 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 ECHS1P30084 290 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 SOX6P35712 828 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 PBX3P40426 434 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 ARL1P40616 181 aaPredicted RBP6.53□□□□□ -1.36
VPS29-210ENST00000552130 GPD2P43304 727 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 ARCN1P48444 511 aaKnown RBP6.53□□□□□ -1.36
VPS29-210ENST00000552130 GBX2P52951 348 aaPredicted RBP6.53□□□□□ -1.36
VPS29-210ENST00000552130 TUBB4BP68371 445 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 RNASELQ05823 741 aaKnown RBP6.53□□□□□ -1.36
VPS29-210ENST00000552130 ZBTB17Q13105 803 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 RIPK1Q13546 671 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 TRA2AQ13595 282 aaKnown RBP eCLIP6.53□□□□□ -1.36
VPS29-210ENST00000552130 ANKRD20A4Q4UJ75 823 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 ANKRD20A8PQ5CZ79 823 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 ANKRD20A2Q5SQ80 823 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 ANKRD20A1Q5TYW2 823 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 ANKRD20A3Q5VUR7 823 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 CST9LP1Q5W188 147 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 PLAG1Q6DJT9 500 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 OTUD7BQ6GQQ9 843 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 ZYG11AQ6WRX3 759 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 HOOK3Q86VS8 718 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 SPATA2LQ8IUW3 424 aaPredicted RBP6.53□□□□□ -1.36
VPS29-210ENST00000552130 ZGPATQ8N5A5 531 aaKnown RBP6.53□□□□□ -1.36
VPS29-210ENST00000552130 ANKRD53Q8N9V6 530 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 CORO2AQ92828 525 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 ELP4Q96EB1 424 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 FIZ1Q96SL8 496 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 TBCDQ9BTW9 1192 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 SSBP3Q9BWW4 388 aaPredicted RBP6.53□□□□□ -1.36
VPS29-210ENST00000552130 PITHD1Q9GZP4 211 aaPredicted RBP6.53□□□□□ -1.36
VPS29-210ENST00000552130 CLSTN2Q9H4D0 955 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 CRLF2Q9HC73 371 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 ANAPC2Q9UJX6 822 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 DBR1Q9UK59 544 aaKnown RBP6.53□□□□□ -1.36
VPS29-210ENST00000552130 CLCA3PQ9Y6N3 262 aa6.53□□□□□ -1.36
VPS29-210ENST00000552130 TTC21BQ7Z4L5 1316 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 ADGRF5Q8IZF2 1346 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 GCOM1H8Y6P7 765 aaPredicted RBP6.52□□□□□ -1.37
VPS29-210ENST00000552130 KIF2AO00139 706 aaPredicted RBP6.52□□□□□ -1.37
VPS29-210ENST00000552130 SEPT4O43236 478 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 VIPP01282 170 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 AMY1AP04745 511 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 FYNP06241 537 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 NEFHP12036 1026 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 CASTP20810 708 aaKnown RBP6.52□□□□□ -1.37
VPS29-210ENST00000552130 TACR1P25103 407 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 SLC5A2P31639 672 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 MAGEA4P43358 317 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 SLC15A1P46059 708 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 SLC11A2P49281 568 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 DIO1P49895 249 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 CDK7P50613 346 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 BMXP51813 675 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 CDH15P55291 814 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 NOMO3P69849 1222 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 POU6F2P78424 691 aaPredicted RBP6.52□□□□□ -1.37
VPS29-210ENST00000552130 TEFQ10587 303 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 TMEM115Q12893 351 aaPredicted RBP6.52□□□□□ -1.37
VPS29-210ENST00000552130 ALCAMQ13740 583 aa6.52□□□□□ -1.37
VPS29-210ENST00000552130 HYAL4Q2M3T9 481 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 163.1 ms