RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 CLDN11O75508 207 aa19.05■□□□□ 0.64
CLN3-206ENST00000360019 SASH3O75995 380 aa19.05■□□□□ 0.64
CLN3-206ENST00000360019 CCNCP24863 283 aa19.05■□□□□ 0.64
CLN3-206ENST00000360019 CHST9Q7L1S5 443 aa19.05■□□□□ 0.64
CLN3-206ENST00000360019 TMC3Q7Z5M5 1100 aa19.05■□□□□ 0.64
CLN3-206ENST00000360019 PCGF5Q86SE9 256 aa19.05■□□□□ 0.64
CLN3-206ENST00000360019 PPIL6Q8IXY8 311 aa19.05■□□□□ 0.64
CLN3-206ENST00000360019 EFHBQ8N7U6 833 aa19.05■□□□□ 0.64
CLN3-206ENST00000360019 TSEN2Q8NCE0 465 aaKnown RBP19.05■□□□□ 0.64
CLN3-206ENST00000360019 OR52K2Q8NGK3 314 aa19.05■□□□□ 0.64
CLN3-206ENST00000360019 APOL5Q9BWW9 433 aa19.05■□□□□ 0.64
CLN3-206ENST00000360019 RETREG1Q9H6L5 497 aa19.05■□□□□ 0.64
CLN3-206ENST00000360019 TDP1Q9NUW8 608 aa19.05■□□□□ 0.64
CLN3-206ENST00000360019 IPO11Q9UI26 975 aaKnown RBP19.05■□□□□ 0.64
CLN3-206ENST00000360019 CDH22Q9UJ99 828 aa19.05■□□□□ 0.64
CLN3-206ENST00000360019 SHOC2Q9UQ13 582 aa19.05■□□□□ 0.64
CLN3-206ENST00000360019 ZNF510Q9Y2H8 683 aa19.05■□□□□ 0.64
CLN3-206ENST00000360019 OPHN1O60890 802 aa19.04■□□□□ 0.64
CLN3-206ENST00000360019 ZNF189O75820 626 aaPredicted RBP19.04■□□□□ 0.64
CLN3-206ENST00000360019 STK10O94804 968 aaKnown RBP19.04■□□□□ 0.64
CLN3-206ENST00000360019 TMEM63AO94886 807 aa19.04■□□□□ 0.64
CLN3-206ENST00000360019 CASP8Q14790 479 aa19.04■□□□□ 0.64
CLN3-206ENST00000360019 POLD3Q15054 466 aaPredicted RBP19.04■□□□□ 0.64
CLN3-206ENST00000360019 PARP15Q460N3 678 aa19.04■□□□□ 0.64
CLN3-206ENST00000360019 C4orf22Q6V702 233 aa19.04■□□□□ 0.64
CLN3-206ENST00000360019 ARHGEF18Q6ZSZ5 1173 aa19.04■□□□□ 0.64
CLN3-206ENST00000360019 LRRC49Q8IUZ0 686 aa19.04■□□□□ 0.64
CLN3-206ENST00000360019 ZNF419Q96HQ0 510 aaPredicted RBP19.04■□□□□ 0.64
CLN3-206ENST00000360019 TXLNGYQ9BZA5 131 aa19.04■□□□□ 0.64
CLN3-206ENST00000360019 ETNK1Q9HBU6 452 aa19.04■□□□□ 0.64
CLN3-206ENST00000360019 ZMYM5Q9UJ78 669 aa19.04■□□□□ 0.64
CLN3-206ENST00000360019 E2F8A0AVK6 867 aa19.04■□□□□ 0.64
CLN3-206ENST00000360019 MTSS1O43312 755 aa19.04■□□□□ 0.64
CLN3-206ENST00000360019 HSPA9P38646 679 aaKnown RBP19.04■□□□□ 0.64
CLN3-206ENST00000360019 GAD2Q05329 585 aa19.04■□□□□ 0.64
CLN3-206ENST00000360019 DHX9Q08211 1270 aaKnown RBP19.04■□□□□ 0.64
CLN3-206ENST00000360019 KCNJ11Q14654 390 aa19.04■□□□□ 0.64
CLN3-206ENST00000360019 TTC39BQ5VTQ0 682 aaPredicted RBP19.04■□□□□ 0.64
CLN3-206ENST00000360019 SYCE2Q6PIF2 218 aa19.04■□□□□ 0.64
CLN3-206ENST00000360019 GPR149Q86SP6 731 aa19.04■□□□□ 0.64
CLN3-206ENST00000360019 MREGQ8N565 214 aa19.04■□□□□ 0.64
CLN3-206ENST00000360019 MYO18AQ92614 2054 aaKnown RBP19.03■□□□□ 0.64
CLN3-206ENST00000360019 CHD5Q8TDI0 1954 aa19.03■□□□□ 0.64
CLN3-206ENST00000360019 A0A0D9SEW6 157 aa19.03■□□□□ 0.64
CLN3-206ENST00000360019 ARHGAP42A6NI28 874 aa19.03■□□□□ 0.64
CLN3-206ENST00000360019 NDC80O14777 642 aa19.03■□□□□ 0.64
CLN3-206ENST00000360019 MATN3O15232 486 aa19.03■□□□□ 0.64
CLN3-206ENST00000360019 TBL1XO60907 577 aa19.03■□□□□ 0.64
CLN3-206ENST00000360019 PEX11BO96011 259 aa19.03■□□□□ 0.64
CLN3-206ENST00000360019 ACVRL1P37023 503 aa19.03■□□□□ 0.64
CLN3-206ENST00000360019 YBEYP58557 167 aaPredicted RBP19.03■□□□□ 0.64
CLN3-206ENST00000360019 ZNF77Q15935 545 aa19.03■□□□□ 0.64
CLN3-206ENST00000360019 LRIT3Q3SXY7 679 aa19.03■□□□□ 0.64
CLN3-206ENST00000360019 TEX44Q53QW1 395 aa19.03■□□□□ 0.64
CLN3-206ENST00000360019 SYCP2LQ5T4T6 812 aa19.03■□□□□ 0.64
CLN3-206ENST00000360019 ANKRD54Q6NXT1 300 aa19.03■□□□□ 0.64
CLN3-206ENST00000360019 HDXQ7Z353 690 aa19.03■□□□□ 0.64
CLN3-206ENST00000360019 HOOK3Q86VS8 718 aa19.03■□□□□ 0.64
CLN3-206ENST00000360019 ARID3BQ8IVW6 561 aaPredicted RBP19.03■□□□□ 0.64
CLN3-206ENST00000360019 CPXM2Q8N436 756 aa19.03■□□□□ 0.64
CLN3-206ENST00000360019 ZCCHC9Q8N567 271 aaKnown RBP19.03■□□□□ 0.64
CLN3-206ENST00000360019 HJURPQ8NCD3 748 aaPredicted RBP19.03■□□□□ 0.64
CLN3-206ENST00000360019 DNAJC17Q9NVM6 304 aaKnown RBP19.03■□□□□ 0.64
CLN3-206ENST00000360019 KLHL8Q9P2G9 620 aaPredicted RBP19.03■□□□□ 0.64
CLN3-206ENST00000360019 TBC1D30Q9Y2I9 924 aa19.03■□□□□ 0.64
CLN3-206ENST00000360019 F5H423 210 aaPredicted RBP19.02■□□□□ 0.64
CLN3-206ENST00000360019 J3KR12 359 aa19.02■□□□□ 0.64
CLN3-206ENST00000360019 MAP2K7O14733 419 aa19.02■□□□□ 0.64
CLN3-206ENST00000360019 PPFIA2O75334 1257 aa19.02■□□□□ 0.64
CLN3-206ENST00000360019 JCHAINP01591 159 aa19.02■□□□□ 0.64
CLN3-206ENST00000360019 CD68P34810 354 aaPredicted RBP19.02■□□□□ 0.64
CLN3-206ENST00000360019 MAGEA6P43360 314 aa19.02■□□□□ 0.64
CLN3-206ENST00000360019 NUMBP49757 651 aa19.02■□□□□ 0.64
CLN3-206ENST00000360019 IFI35P80217 286 aaPredicted RBP19.02■□□□□ 0.64
CLN3-206ENST00000360019 SERINC3Q13530 473 aa19.02■□□□□ 0.64
CLN3-206ENST00000360019 C6orf118Q5T5N4 469 aa19.02■□□□□ 0.64
CLN3-206ENST00000360019 CXorf57Q6NSI4 855 aaKnown RBP19.02■□□□□ 0.64
CLN3-206ENST00000360019 TIGD7Q6NT04 549 aaPredicted RBP19.02■□□□□ 0.64
CLN3-206ENST00000360019 PID1Q7Z2X4 250 aa19.02■□□□□ 0.64
CLN3-206ENST00000360019 CCDC25Q86WR0 208 aa19.02■□□□□ 0.64
CLN3-206ENST00000360019 CNTD1Q8N815 330 aa19.02■□□□□ 0.64
CLN3-206ENST00000360019 TDRD5Q8NAT2 981 aaKnown RBP19.02■□□□□ 0.64
CLN3-206ENST00000360019 ARHGEF2Q92974 986 aaKnown RBP19.02■□□□□ 0.64
CLN3-206ENST00000360019 TMA16Q96EY4 203 aaKnown RBP19.02■□□□□ 0.64
CLN3-206ENST00000360019 AGAP3Q96P47 875 aa19.02■□□□□ 0.64
CLN3-206ENST00000360019 VAT1Q99536 393 aa19.02■□□□□ 0.64
CLN3-206ENST00000360019 TTYH1Q9H313 450 aaPredicted RBP19.02■□□□□ 0.64
CLN3-206ENST00000360019 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP19.02■□□□□ 0.63
CLN3-206ENST00000360019 GOLGA8MH3BSY2 632 aa19.02■□□□□ 0.63
CLN3-206ENST00000360019 CHADO15335 359 aa19.02■□□□□ 0.63
CLN3-206ENST00000360019 ZBTB24O43167 697 aaPredicted RBP19.02■□□□□ 0.63
CLN3-206ENST00000360019 CCNB1P14635 433 aa19.02■□□□□ 0.63
CLN3-206ENST00000360019 PSMB4P28070 264 aa19.02■□□□□ 0.63
CLN3-206ENST00000360019 GNA12Q03113 381 aa19.02■□□□□ 0.63
CLN3-206ENST00000360019 USP4Q13107 963 aa19.02■□□□□ 0.63
CLN3-206ENST00000360019 ZNF177Q13360 481 aaPredicted RBP19.02■□□□□ 0.63
CLN3-206ENST00000360019 SEMA5AQ13591 1074 aa19.02■□□□□ 0.63
CLN3-206ENST00000360019 SETD3Q86TU7 594 aaPredicted RBP19.02■□□□□ 0.63
CLN3-206ENST00000360019 NPAS3Q8IXF0 933 aa19.02■□□□□ 0.63
CLN3-206ENST00000360019 USP33Q8TEY7 942 aa19.02■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 90.5 ms