RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 PLEKHA7Q6IQ23 1121 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 FAM171BQ6P995 826 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 GSTA5Q7RTV2 222 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 CRIPAKQ8N1N5 446 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 PAF1Q8N7H5 531 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 HSFY1Q96LI6 401 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 POPDC2Q9HBU9 364 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 MAN1C1Q9NR34 630 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 ZNF180Q9UJW8 692 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 C2orf71A6NGG8 1288 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 TLR5O60602 858 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 TSPAN3O60637 253 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 TRUB2O95900 331 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 MBL2P11226 248 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 RALAP11233 206 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 ATF6P18850 670 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 TUFMP49411 452 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 EPHB1P54762 984 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 DSG1Q02413 1049 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 CCDC14Q49A88 953 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 KHDC1Q4VXA5 237 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 NANOGNBQ7Z5D8 188 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 DNAJB7Q7Z6W7 309 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 RHOT1Q8IXI2 618 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 FAM13CQ8NE31 585 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 STK32AQ8WU08 396 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 TBC1D10AQ9BXI6 508 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 SLC4A5Q9BY07 1137 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 SEPT10Q9P0V9 454 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 ARMCX1Q9P291 453 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 DYNC1LI1Q9Y6G9 523 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 TNRC18O15417 2968 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 FNDC1Q4ZHG4 1894 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 ALPK3Q96L96 1907 aa8.91□□□□□ -0.98
LIMCH1-209ENST00000509277 RASA4BC9J798 803 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 TMEM189-UBE2V1I3L0A0 370 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 LSM1O15116 133 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 RASA4O43374 803 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 LRCH4O75427 683 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 CTSAP10619 480 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 ATF2P15336 505 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 CA4P22748 312 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 SERPINB6P35237 376 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 VCPP55072 806 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 ZNF252P-AS1Q0IIN9 211 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 DYNC1I2Q13409 638 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 STXBP5Q5T5C0 1151 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 IZUMO2Q6UXV1 221 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 TMEM110Q86TL2 294 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 TDHQ8IZJ6 230 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 CCDC185Q8N715 623 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 CNPY3Q9BT09 278 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 C12orf65Q9H3J6 166 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 WDCPQ9H6R7 721 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 TXLNGQ9NUQ3 528 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 MARCOQ9UEW3 520 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 PAIP2BQ9ULR5 123 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 TCRBV7S2A1N4TA0A589 114 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 OR6B1O95007 311 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 IL1R2P27930 398 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 NEK3P51956 506 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 CA9Q16790 459 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 TAF1BQ53T94 588 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 RARS2Q5T160 578 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 MEI1Q5TIA1 1274 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 GRASPQ7Z6J2 395 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 TFAP2DQ7Z6R9 452 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 TAC4Q86UU9 113 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 ARL14EPQ8N8R7 260 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 NAP1L3Q99457 506 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 TKTL2Q9H0I9 626 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 DENND2DQ9H6A0 471 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 PLK2Q9NYY3 685 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 TRPM5Q9NZQ8 1165 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 AFF4Q9UHB7 1163 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 XPO7Q9UIA9 1087 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 ZFP69BQ9UJL9 534 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 TTC7AQ9ULT0 858 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 INSL5Q9Y5Q6 135 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 WASF2Q9Y6W5 498 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 NCANO14594 1321 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 GON4LQ3T8J9 2241 aa8.9□□□□□ -0.98
LIMCH1-209ENST00000509277 C2orf78A6NCI8 922 aa8.9□□□□□ -0.99
LIMCH1-209ENST00000509277 EPOPA6NHQ4 379 aa8.9□□□□□ -0.99
LIMCH1-209ENST00000509277 HAPLN1P10915 354 aaPredicted RBP8.9□□□□□ -0.99
LIMCH1-209ENST00000509277 WEE1P30291 646 aa8.9□□□□□ -0.99
LIMCH1-209ENST00000509277 IRX4P78413 519 aa8.9□□□□□ -0.99
LIMCH1-209ENST00000509277 HTRA4P83105 476 aaPredicted RBP8.9□□□□□ -0.99
LIMCH1-209ENST00000509277 PIGHQ14442 188 aaPredicted RBP8.9□□□□□ -0.99
LIMCH1-209ENST00000509277 SLC5A9Q2M3M2 681 aa8.9□□□□□ -0.99
LIMCH1-209ENST00000509277 MFSD7Q6UXD7 560 aa8.9□□□□□ -0.99
LIMCH1-209ENST00000509277 EFCAB3Q8N7B9 438 aa8.9□□□□□ -0.99
LIMCH1-209ENST00000509277 CCNYQ8ND76 341 aa8.9□□□□□ -0.99
LIMCH1-209ENST00000509277 CASP10Q92851 521 aa8.9□□□□□ -0.99
LIMCH1-209ENST00000509277 KLHL5Q96PQ7 755 aa8.9□□□□□ -0.99
LIMCH1-209ENST00000509277 GCNAQ96QF7 691 aa8.9□□□□□ -0.99
LIMCH1-209ENST00000509277 VPS37BQ9H9H4 285 aa8.9□□□□□ -0.99
LIMCH1-209ENST00000509277 AVENQ9NQS1 362 aaPredicted RBP8.9□□□□□ -0.99
LIMCH1-209ENST00000509277 PACSIN3Q9UKS6 424 aa8.9□□□□□ -0.99
LIMCH1-209ENST00000509277 TANC1Q9C0D5 1861 aa8.9□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms