RNA–Protein interactions for RNA: ENST00000471701.1

PRPF40A-207, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 293 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-207ENST00000471701 LIMD1Q9UGP4 676 aa8.6□□□□□ -1.03
PRPF40A-207ENST00000471701 WASF2Q9Y6W5 498 aa8.6□□□□□ -1.03
PRPF40A-207ENST00000471701 HPS1Q92902 700 aa8.59□□□□□ -1.03
PRPF40A-207ENST00000471701 POLR3EQ9NVU0 708 aa8.59□□□□□ -1.03
PRPF40A-207ENST00000471701 DACH1Q9UI36 760 aa8.59□□□□□ -1.03
PRPF40A-207ENST00000471701 SIAH2O43255 324 aa8.58□□□□□ -1.04
PRPF40A-207ENST00000471701 LILRB3O75022 631 aa8.58□□□□□ -1.04
PRPF40A-207ENST00000471701 VARSP26640 1264 aaKnown RBP8.58□□□□□ -1.04
PRPF40A-207ENST00000471701 CLK2P49760 499 aaKnown RBP8.58□□□□□ -1.04
PRPF40A-207ENST00000471701 ZNF511Q8NB15 262 aa8.58□□□□□ -1.04
PRPF40A-207ENST00000471701 PLEKHG3A1L390 1219 aa8.57□□□□□ -1.04
PRPF40A-207ENST00000471701 C11orf95C9JLR9 678 aaPredicted RBP8.57□□□□□ -1.04
PRPF40A-207ENST00000471701 QPCTQ16769 361 aa8.57□□□□□ -1.04
PRPF40A-207ENST00000471701 HELBQ8NG08 1087 aaPredicted RBP8.56□□□□□ -1.04
PRPF40A-207ENST00000471701 GMPR2Q9P2T1 348 aaKnown RBP8.56□□□□□ -1.04
PRPF40A-207ENST00000471701 AGERQ15109 404 aa8.55□□□□□ -1.04
PRPF40A-207ENST00000471701 RTL5Q5HYW3 569 aaPredicted RBP8.54□□□□□ -1.04
PRPF40A-207ENST00000471701 ARMC2Q8NEN0 867 aa8.54□□□□□ -1.04
PRPF40A-207ENST00000471701 FAM174AQ8TBP5 190 aa8.54□□□□□ -1.04
PRPF40A-207ENST00000471701 DDRGK1Q96HY6 314 aa8.54□□□□□ -1.04
PRPF40A-207ENST00000471701 KDM4CQ9H3R0 1056 aa8.54□□□□□ -1.04
PRPF40A-207ENST00000471701 SENP2Q9HC62 589 aa8.54□□□□□ -1.04
PRPF40A-207ENST00000471701 ATP13A2Q9NQ11 1180 aa8.54□□□□□ -1.04
PRPF40A-207ENST00000471701 MAP10Q9P2G4 905 aa8.54□□□□□ -1.04
PRPF40A-207ENST00000471701 PER1O15534 1290 aaPredicted RBP8.53□□□□□ -1.04
PRPF40A-207ENST00000471701 F12P00748 615 aaPredicted RBP8.53□□□□□ -1.04
PRPF40A-207ENST00000471701 SKIV2LQ15477 1246 aaKnown RBP8.53□□□□□ -1.04
PRPF40A-207ENST00000471701 GPBP1L1Q9HC44 474 aaPredicted RBP8.53□□□□□ -1.04
PRPF40A-207ENST00000471701 MPNDQ8N594 471 aa8.52□□□□□ -1.05
PRPF40A-207ENST00000471701 CAPN5O15484 640 aaPredicted RBP8.51□□□□□ -1.05
PRPF40A-207ENST00000471701 BPHLQ86WA6 291 aaPredicted RBP8.51□□□□□ -1.05
PRPF40A-207ENST00000471701 ARID5BQ14865 1188 aa8.5□□□□□ -1.05
PRPF40A-207ENST00000471701 FOXJ1Q92949 421 aa8.5□□□□□ -1.05
PRPF40A-207ENST00000471701 KIFC2Q96AC6 838 aa8.5□□□□□ -1.05
PRPF40A-207ENST00000471701 FAM117AQ9C073 453 aa8.5□□□□□ -1.05
PRPF40A-207ENST00000471701 SH3D19Q5HYK7 790 aa8.49□□□□□ -1.05
PRPF40A-207ENST00000471701 TLL2Q9Y6L7 1015 aa8.49□□□□□ -1.05
PRPF40A-207ENST00000471701 CTDSPL2Q05D32 466 aa8.48□□□□□ -1.05
PRPF40A-207ENST00000471701 NNTQ13423 1086 aa8.47□□□□□ -1.05
PRPF40A-207ENST00000471701 NBPF14Q5TI25 921 aa8.47□□□□□ -1.05
PRPF40A-207ENST00000471701 PROCA1Q8NCQ7 364 aaPredicted RBP8.47□□□□□ -1.05
PRPF40A-207ENST00000471701 TRIM47Q96LD4 638 aa8.47□□□□□ -1.05
PRPF40A-207ENST00000471701 SNRPBP14678 240 aaKnown RBP8.45□□□□□ -1.06
PRPF40A-207ENST00000471701 TREML4Q6UXN2 200 aa8.45□□□□□ -1.06
PRPF40A-207ENST00000471701 CDK15Q96Q40 435 aa8.45□□□□□ -1.06
PRPF40A-207ENST00000471701 ADH1CP00326 375 aa8.44□□□□□ -1.06
PRPF40A-207ENST00000471701 WDR4P57081 412 aaKnown RBP8.44□□□□□ -1.06
PRPF40A-207ENST00000471701 GPKOWQ92917 476 aaPredicted RBP eCLIP8.44□□□□□ -1.061e-7■■□□□ 11.5
PRPF40A-207ENST00000471701 MAGEB6P1A0A0J9YX57 407 aa8.43□□□□□ -1.06
PRPF40A-207ENST00000471701 AP1G2O75843 785 aa8.43□□□□□ -1.06
PRPF40A-207ENST00000471701 NR5A1Q13285 461 aa8.43□□□□□ -1.06
PRPF40A-207ENST00000471701 PPP2R2DQ66LE6 453 aa8.43□□□□□ -1.06
PRPF40A-207ENST00000471701 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.43□□□□□ -1.06
PRPF40A-207ENST00000471701 WFS1O76024 890 aa8.42□□□□□ -1.06
PRPF40A-207ENST00000471701 SCARF1Q14162 830 aa8.42□□□□□ -1.06
PRPF40A-207ENST00000471701 C4orf48Q5BLP8 95 aa8.42□□□□□ -1.06
PRPF40A-207ENST00000471701 BMP1P13497 986 aa8.41□□□□□ -1.06
PRPF40A-207ENST00000471701 NEUROD2Q15784 382 aa8.41□□□□□ -1.06
PRPF40A-207ENST00000471701 LRRN4Q8WUT4 740 aa8.41□□□□□ -1.06
PRPF40A-207ENST00000471701 GRM5P41594 1212 aa8.4□□□□□ -1.06
PRPF40A-207ENST00000471701 PDXDC2PQ6P474 469 aa8.4□□□□□ -1.06
PRPF40A-207ENST00000471701 VASH1Q7L8A9 365 aaPredicted RBP8.4□□□□□ -1.06
PRPF40A-207ENST00000471701 TRIM46Q7Z4K8 759 aa8.4□□□□□ -1.06
PRPF40A-207ENST00000471701 SH3RF1Q7Z6J0 888 aa8.4□□□□□ -1.06
PRPF40A-207ENST00000471701 PCMTD1Q96MG8 357 aaPredicted RBP8.4□□□□□ -1.06
PRPF40A-207ENST00000471701 TIMP2P16035 220 aa8.39□□□□□ -1.07
PRPF40A-207ENST00000471701 NR6A1Q15406 480 aa8.39□□□□□ -1.07
PRPF40A-207ENST00000471701 SH3BP5LQ7L8J4 393 aa8.39□□□□□ -1.07
PRPF40A-207ENST00000471701 PNMA1Q8ND90 353 aa8.39□□□□□ -1.07
PRPF40A-207ENST00000471701 CARD14Q9BXL6 1004 aa8.39□□□□□ -1.07
PRPF40A-207ENST00000471701 FKBPLQ9UIM3 349 aa8.39□□□□□ -1.07
PRPF40A-207ENST00000471701 ZIC2O95409 532 aaPredicted RBP8.38□□□□□ -1.07
PRPF40A-207ENST00000471701 MRPL14Q6P1L8 145 aaKnown RBP8.38□□□□□ -1.07
PRPF40A-207ENST00000471701 ZBTB33Q86T24 672 aa8.38□□□□□ -1.07
PRPF40A-207ENST00000471701 IL27Q8NEV9 243 aa8.38□□□□□ -1.07
PRPF40A-207ENST00000471701 ZFP42Q96MM3 310 aa8.38□□□□□ -1.07
PRPF40A-207ENST00000471701 ARHGAP9Q9BRR9 750 aa8.38□□□□□ -1.07
PRPF40A-207ENST00000471701 TERTO14746 1132 aaKnown RBP8.37□□□□□ -1.07
PRPF40A-207ENST00000471701 UPP2O95045 317 aa8.37□□□□□ -1.07
PRPF40A-207ENST00000471701 FBXO31Q5XUX0 539 aaPredicted RBP8.37□□□□□ -1.07
PRPF40A-207ENST00000471701 TRMT44Q8IYL2 757 aaKnown RBP8.37□□□□□ -1.07
PRPF40A-207ENST00000471701 SLC16A10Q8TF71 515 aa8.37□□□□□ -1.07
PRPF40A-207ENST00000471701 C1QTNF2Q9BXJ5 285 aa8.37□□□□□ -1.07
PRPF40A-207ENST00000471701 KLF16Q9BXK1 252 aaPredicted RBP8.37□□□□□ -1.07
PRPF40A-207ENST00000471701 GOPCQ9HD26 462 aa8.37□□□□□ -1.07
PRPF40A-207ENST00000471701 MAP4K5Q9Y4K4 846 aa8.37□□□□□ -1.07
PRPF40A-207ENST00000471701 ZC3H4Q9UPT8 1303 aaKnown RBP8.36□□□□□ -1.07
PRPF40A-207ENST00000471701 PTK2Q05397 1052 aa8.36□□□□□ -1.07
PRPF40A-207ENST00000471701 ITPKCQ96DU7 683 aa8.36□□□□□ -1.07
PRPF40A-207ENST00000471701 PURBQ96QR8 312 aaKnown RBP8.36□□□□□ -1.07
PRPF40A-207ENST00000471701 NR3C2P08235 984 aa8.35□□□□□ -1.07
PRPF40A-207ENST00000471701 RFC5P40937 340 aa8.35□□□□□ -1.07
PRPF40A-207ENST00000471701 NFX1Q12986 1120 aaKnown RBP8.35□□□□□ -1.07
PRPF40A-207ENST00000471701 ERFEQ4G0M1 354 aa8.35□□□□□ -1.07
PRPF40A-207ENST00000471701 ZFAND3Q9H8U3 227 aa8.35□□□□□ -1.07
PRPF40A-207ENST00000471701 NXF1Q9UBU9 619 aaKnown RBP8.35□□□□□ -1.07
PRPF40A-207ENST00000471701 FSHRP23945 695 aa8.34□□□□□ -1.07
PRPF40A-207ENST00000471701 TMEM259Q4ZIN3 620 aa8.34□□□□□ -1.07
PRPF40A-207ENST00000471701 CDV3Q9UKY7 258 aaKnown RBP8.34□□□□□ -1.07
PRPF40A-207ENST00000471701 EMILIN1Q9Y6C2 1016 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms