RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 SAMSN1Q9NSI8 373 aaKnown RBP19.7■□□□□ 0.74
CCDC28A-203ENST00000617445 ERVW-1Q9UQF0 538 aa19.7■□□□□ 0.74
CCDC28A-203ENST00000617445 CABIN1Q9Y6J0 2220 aa19.7■□□□□ 0.74
CCDC28A-203ENST00000617445 A0A1B0GVM2 712 aa19.69■□□□□ 0.74
CCDC28A-203ENST00000617445 TCAF2A6NFQ2 919 aa19.69■□□□□ 0.74
CCDC28A-203ENST00000617445 GRAP2O75791 330 aa19.69■□□□□ 0.74
CCDC28A-203ENST00000617445 LSM8O95777 96 aaKnown RBP19.69■□□□□ 0.74
CCDC28A-203ENST00000617445 ERBB2P04626 1255 aa19.69■□□□□ 0.74
CCDC28A-203ENST00000617445 TPM2P07951 284 aa19.69■□□□□ 0.74
CCDC28A-203ENST00000617445 UCHL3P15374 230 aa19.69■□□□□ 0.74
CCDC28A-203ENST00000617445 CYP11B1P15538 503 aa19.69■□□□□ 0.74
CCDC28A-203ENST00000617445 MATKP42679 507 aa19.69■□□□□ 0.74
CCDC28A-203ENST00000617445 GABRB2P47870 512 aa19.69■□□□□ 0.74
CCDC28A-203ENST00000617445 PLK1P53350 603 aa19.69■□□□□ 0.74
CCDC28A-203ENST00000617445 HSP90AA4PQ58FG1 418 aa19.69■□□□□ 0.74
CCDC28A-203ENST00000617445 ACBD5Q5T8D3 534 aaPredicted RBP19.69■□□□□ 0.74
CCDC28A-203ENST00000617445 IL27RAQ6UWB1 636 aa19.69■□□□□ 0.74
CCDC28A-203ENST00000617445 FAM124AQ86V42 546 aa19.69■□□□□ 0.74
CCDC28A-203ENST00000617445 CACUL1Q86Y37 369 aa19.69■□□□□ 0.74
CCDC28A-203ENST00000617445 DEFB124Q8NES8 71 aa19.69■□□□□ 0.74
CCDC28A-203ENST00000617445 NAA15Q9BXJ9 866 aaKnown RBP19.69■□□□□ 0.74
CCDC28A-203ENST00000617445 STK33Q9BYT3 514 aa19.69■□□□□ 0.74
CCDC28A-203ENST00000617445 MIR1-1HGQ9H1L0 117 aa19.69■□□□□ 0.74
CCDC28A-203ENST00000617445 OSGEPQ9NPF4 335 aa19.69■□□□□ 0.74
CCDC28A-203ENST00000617445 PLCB1Q9NQ66 1216 aa19.69■□□□□ 0.74
CCDC28A-203ENST00000617445 DAAM1Q9Y4D1 1078 aa19.69■□□□□ 0.74
CCDC28A-203ENST00000617445 PAXBP1Q9Y5B6 917 aa19.69■□□□□ 0.74
CCDC28A-203ENST00000617445 ITIH6Q6UXX5 1313 aa19.69■□□□□ 0.74
CCDC28A-203ENST00000617445 EDDM13A0A1B0GTR0 161 aa19.68■□□□□ 0.74
CCDC28A-203ENST00000617445 SEMA4FO95754 770 aa19.68■□□□□ 0.74
CCDC28A-203ENST00000617445 F9P00740 461 aa19.68■□□□□ 0.74
CCDC28A-203ENST00000617445 ACSL1P33121 698 aa19.68■□□□□ 0.74
CCDC28A-203ENST00000617445 VASPP50552 380 aaPredicted RBP19.68■□□□□ 0.74
CCDC28A-203ENST00000617445 CCAR2Q8N163 923 aaKnown RBP19.68■□□□□ 0.74
CCDC28A-203ENST00000617445 ZCCHC9Q8N567 271 aaKnown RBP19.68■□□□□ 0.74
CCDC28A-203ENST00000617445 MSANTD4Q8NCY6 345 aa19.68■□□□□ 0.74
CCDC28A-203ENST00000617445 C18orf8Q96DM3 657 aa19.68■□□□□ 0.74
CCDC28A-203ENST00000617445 FSCN3Q9NQT6 498 aa19.68■□□□□ 0.74
CCDC28A-203ENST00000617445 EIF2B4Q9UI10 523 aaKnown RBP19.68■□□□□ 0.74
CCDC28A-203ENST00000617445 STAP1Q9ULZ2 295 aa19.68■□□□□ 0.74
CCDC28A-203ENST00000617445 FHOD1Q9Y613 1164 aa19.68■□□□□ 0.74
CCDC28A-203ENST00000617445 SYNJ2BP-COX16A0A087WUM0 186 aa19.67■□□□□ 0.74
CCDC28A-203ENST00000617445 M0QYT0 321 aa19.67■□□□□ 0.74
CCDC28A-203ENST00000617445 SIN3BO75182 1162 aa19.67■□□□□ 0.74
CCDC28A-203ENST00000617445 GJB3O75712 270 aa19.67■□□□□ 0.74
CCDC28A-203ENST00000617445 PNMA6AP0CW24 399 aaPredicted RBP19.67■□□□□ 0.74
CCDC28A-203ENST00000617445 RDXP35241 583 aaKnown RBP19.67■□□□□ 0.74
CCDC28A-203ENST00000617445 GRIK2Q13002 908 aa19.67■□□□□ 0.74
CCDC28A-203ENST00000617445 NME3Q13232 169 aa19.67■□□□□ 0.74
CCDC28A-203ENST00000617445 AUHQ13825 339 aaKnown RBP19.67■□□□□ 0.74
CCDC28A-203ENST00000617445 BRMS1LQ5PSV4 323 aa19.67■□□□□ 0.74
CCDC28A-203ENST00000617445 C9orf64Q5T6V5 341 aa19.67■□□□□ 0.74
CCDC28A-203ENST00000617445 FBXL22Q6P050 247 aa19.67■□□□□ 0.74
CCDC28A-203ENST00000617445 MMS22LQ6ZRQ5 1243 aa19.67■□□□□ 0.74
CCDC28A-203ENST00000617445 RBM43Q6ZSC3 357 aaKnown RBP19.67■□□□□ 0.74
CCDC28A-203ENST00000617445 SND1Q7KZF4 910 aaKnown RBP eCLIP19.67■□□□□ 0.74
CCDC28A-203ENST00000617445 ERICH1Q86X53 443 aa19.67■□□□□ 0.74
CCDC28A-203ENST00000617445 C1orf216Q8TAB5 229 aa19.67■□□□□ 0.74
CCDC28A-203ENST00000617445 PGAP3Q96FM1 320 aaPredicted RBP19.67■□□□□ 0.74
CCDC28A-203ENST00000617445 RPRD1AQ96P16 312 aaPredicted RBP19.67■□□□□ 0.74
CCDC28A-203ENST00000617445 PABPC3Q9H361 631 aaKnown RBP19.67■□□□□ 0.74
CCDC28A-203ENST00000617445 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP19.67■□□□□ 0.74
CCDC28A-203ENST00000617445 COX16Q9P0S2 106 aa19.67■□□□□ 0.74
CCDC28A-203ENST00000617445 ZBTB32Q9Y2Y4 487 aaPredicted RBP19.67■□□□□ 0.74
CCDC28A-203ENST00000617445 GOLGA6L22H0YM25 854 aa19.66■□□□□ 0.74
CCDC28A-203ENST00000617445 CER1O95813 267 aa19.66■□□□□ 0.74
CCDC28A-203ENST00000617445 ZNF883P0CG24 379 aa19.66■□□□□ 0.74
CCDC28A-203ENST00000617445 CD59P13987 128 aa19.66■□□□□ 0.74
CCDC28A-203ENST00000617445 AFF3P51826 1226 aaKnown RBP19.66■□□□□ 0.74
CCDC28A-203ENST00000617445 C5orf22Q49AR2 442 aa19.66■□□□□ 0.74
CCDC28A-203ENST00000617445 LRSAM1Q6UWE0 723 aa19.66■□□□□ 0.74
CCDC28A-203ENST00000617445 ZNF677Q86XU0 584 aa19.66■□□□□ 0.74
CCDC28A-203ENST00000617445 DHX40Q8IX18 779 aaKnown RBP19.66■□□□□ 0.74
CCDC28A-203ENST00000617445 APCDD1Q8J025 514 aa19.66■□□□□ 0.74
CCDC28A-203ENST00000617445 NT5C3BQ969T7 300 aa19.66■□□□□ 0.74
CCDC28A-203ENST00000617445 NPY6RQ99463 290 aa19.66■□□□□ 0.74
CCDC28A-203ENST00000617445 C6orf106Q9H6K1 298 aaPredicted RBP19.66■□□□□ 0.74
CCDC28A-203ENST00000617445 WDCPQ9H6R7 721 aa19.66■□□□□ 0.74
CCDC28A-203ENST00000617445 FBXL12Q9NXK8 326 aa19.66■□□□□ 0.74
CCDC28A-203ENST00000617445 TPX2Q9ULW0 747 aaKnown RBP19.66■□□□□ 0.74
CCDC28A-203ENST00000617445 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP19.65■□□□□ 0.74
CCDC28A-203ENST00000617445 F8VZ95 297 aa19.65■□□□□ 0.74
CCDC28A-203ENST00000617445 CLDN11O75508 207 aa19.65■□□□□ 0.74
CCDC28A-203ENST00000617445 CTSOP43234 321 aaPredicted RBP19.65■□□□□ 0.74
CCDC28A-203ENST00000617445 CXCR3P49682 368 aa19.65■□□□□ 0.74
CCDC28A-203ENST00000617445 ZNF177Q13360 481 aaPredicted RBP19.65■□□□□ 0.74
CCDC28A-203ENST00000617445 TEAD4Q15561 434 aa19.65■□□□□ 0.74
CCDC28A-203ENST00000617445 CST6Q15828 149 aa19.65■□□□□ 0.74
CCDC28A-203ENST00000617445 SLC25A52Q3SY17 297 aa19.65■□□□□ 0.74
CCDC28A-203ENST00000617445 FKBP15Q5T1M5 1219 aa19.65■□□□□ 0.74
CCDC28A-203ENST00000617445 CDKAL1Q5VV42 579 aa19.65■□□□□ 0.74
CCDC28A-203ENST00000617445 ARCQ7LC44 396 aa19.65■□□□□ 0.74
CCDC28A-203ENST00000617445 GANCQ8TET4 914 aa19.65■□□□□ 0.74
CCDC28A-203ENST00000617445 ARHGEF38Q9NXL2 777 aa19.65■□□□□ 0.74
CCDC28A-203ENST00000617445 ADAMTS1Q9UHI8 967 aa19.65■□□□□ 0.74
CCDC28A-203ENST00000617445 SLCO3A1Q9UIG8 710 aa19.65■□□□□ 0.74
CCDC28A-203ENST00000617445 FZD4Q9ULV1 537 aa19.65■□□□□ 0.74
CCDC28A-203ENST00000617445 HS3ST4Q9Y661 456 aa19.65■□□□□ 0.74
CCDC28A-203ENST00000617445 TTC34A8MYJ7 566 aa19.64■□□□□ 0.73
CCDC28A-203ENST00000617445 PAGE1O75459 146 aa19.64■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 546.9 ms